CRAN Package Check Results for Package cinaR

Last updated on 2021-03-30 05:47:49 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 4.83 129.14 133.97 WARN
r-devel-linux-x86_64-debian-gcc 0.2.0 3.69 98.18 101.87 WARN
r-devel-linux-x86_64-fedora-clang 0.2.0 178.16 WARN
r-devel-linux-x86_64-fedora-gcc 0.2.0 160.25 WARN
r-devel-windows-ix86+x86_64 0.2.0 17.00 167.00 184.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.2.0 ERROR
r-patched-linux-x86_64 0.2.0 7.25 132.23 139.48 OK
r-patched-solaris-x86 0.2.0 261.40 OK
r-release-linux-x86_64 0.2.0 5.78 131.83 137.61 OK
r-release-macos-x86_64 0.2.0 ERROR
r-release-windows-ix86+x86_64 0.2.0 12.00 127.00 139.00 OK
r-oldrel-macos-x86_64 0.2.0 ERROR
r-oldrel-windows-ix86+x86_64 0.2.0 13.00 127.00 140.00 OK

Additional issues

M1mac

Check Details

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'cinaR.Rmd' using rmarkdown
    >> Experiment type: ATAC-Seq
    >> Matrix is filtered!
    
    Quitting from lines 53-55 (cinaR.Rmd)
    Error: processing vignette 'cinaR.Rmd' failed with diagnostics:
    error in evaluating the argument 'args' in selecting a method for function 'do.call': GRanges objects don't support [[, as.list(), lapply(), or unlist() at
     the moment
    --- failed re-building 'cinaR.Rmd'
    
    SUMMARY: processing the following file failed:
     'cinaR.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘cinaR.Rmd’ using rmarkdown
    >> Experiment type: ATAC-Seq
    >> Matrix is filtered!
    
    Quitting from lines 53-55 (cinaR.Rmd)
    Error: processing vignette 'cinaR.Rmd' failed with diagnostics:
    error in evaluating the argument 'args' in selecting a method for function 'do.call': GRanges objects don't support [[, as.list(), lapply(), or unlist() at
     the moment
    --- failed re-building ‘cinaR.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘cinaR.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
     'TxDb.Hsapiens.UCSC.hg19.knownGene',
     'TxDb.Mmusculus.UCSC.mm10.knownGene'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavors: r-devel-windows-x86_64-gcc10-UCRT, r-oldrel-macos-x86_64

Version: 0.2.0
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'ChIPseeker', 'fgsea', 'TxDb.Hsapiens.UCSC.hg38.knownGene'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-x86_64