Last updated on 2021-04-01 07:52:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 13.64 | 257.89 | 271.53 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 10.29 | 89.81 | 100.10 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 306.55 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 295.77 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2.3 | 40.00 | 448.00 | 488.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.2.3 | ERROR | ||||
| r-patched-linux-x86_64 | 1.2.3 | 11.74 | 232.56 | 244.30 | OK | |
| r-patched-solaris-x86 | 1.2.3 | 429.50 | OK | |||
| r-release-linux-x86_64 | 1.2.3 | 10.44 | 111.50 | 121.94 | ERROR | |
| r-release-macos-x86_64 | 1.2.3 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.2.3 | 30.00 | 361.00 | 391.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.3 | 34.00 | 433.00 | 467.00 | OK |
Version: 1.2.3
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘ausplotsR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ausplotsR-package
> ### Title: Live extraction, preparation, visualisation and analysis of TERN
> ### AusPlots ecosystem monitoring data.
> ### Aliases: ausplotsR-package ausplotsR
>
> ### ** Examples
>
> #load package:
> library(ausplotsR)
>
> #get data for selected plots:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"),
+ veg.PI=FALSE, basal.wedge=TRUE, structural_summaries=TRUE)
Timeout was reached: [swarmapi.ausplots.aekos.org.au:80] Connection timed out after 10001 milliseconds
>
> #view module:
> my.data$struct.summ
NULL
>
> #get site info, veg vouchers and veg point intercept for all available plots:
> ## Not run: get_ausplots()
>
> #get a species by sites table:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"))
Failed to connect to swarmapi.ausplots.aekos.org.au port 80: No route to host
>
> species_table(my.data$veg.PI, m_kind="percent_cover", cover_type="PFC", species_name="SN")
Error in species_table(my.data$veg.PI, m_kind = "percent_cover", cover_type = "PFC", :
veg.PI must be a data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘start_guide.Rmd’ using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-7
Loading required package: maps
Loading required package: mapdata
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'fig1'. Reason:
Error in loadNamespace(x) : there is no package called 'formatR'
Quitting from lines 87-89 (start_guide.Rmd)
Error: processing vignette 'start_guide.Rmd' failed with diagnostics:
The input 'my.ausplots.object' must contain $site.info data to generate a map!
--- failed re-building ‘start_guide.Rmd’
SUMMARY: processing the following file failed:
‘start_guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in 'ausplotsR-Ex.R' failed
The error most likely occurred in:
> ### Name: ausplotsR-package
> ### Title: Live extraction, preparation, visualisation and analysis of TERN
> ### AusPlots ecosystem monitoring data.
> ### Aliases: ausplotsR-package ausplotsR
>
> ### ** Examples
>
> #load package:
> library(ausplotsR)
>
> #get data for selected plots:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"),
+ veg.PI=FALSE, basal.wedge=TRUE, structural_summaries=TRUE)
Timeout was reached: [swarmapi.ausplots.aekos.org.au:80] Connection timed out after 10000 milliseconds
>
> #view module:
> my.data$struct.summ
NULL
>
> #get site info, veg vouchers and veg point intercept for all available plots:
> ## Not run: get_ausplots()
>
> #get a species by sites table:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"))
Timeout was reached: [swarmapi.ausplots.aekos.org.au:80] Connection timed out after 10003 milliseconds
>
> species_table(my.data$veg.PI, m_kind="percent_cover", cover_type="PFC", species_name="SN")
Error in species_table(my.data$veg.PI, m_kind = "percent_cover", cover_type = "PFC", :
veg.PI must be a data.frame
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 1.2.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'start_guide.Rmd' using rmarkdown
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-7
Loading required package: maps
Loading required package: mapdata
Quitting from lines 87-89 (start_guide.Rmd)
Error: processing vignette 'start_guide.Rmd' failed with diagnostics:
The input 'my.ausplots.object' must contain $site.info data to generate a map!
--- failed re-building 'start_guide.Rmd'
SUMMARY: processing the following file failed:
'start_guide.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘ausplotsR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ausplotsR-package
> ### Title: Live extraction, preparation, visualisation and analysis of TERN
> ### AusPlots ecosystem monitoring data.
> ### Aliases: ausplotsR-package ausplotsR
>
> ### ** Examples
>
> #load package:
> library(ausplotsR)
>
> #get data for selected plots:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"),
+ veg.PI=FALSE, basal.wedge=TRUE, structural_summaries=TRUE)
Timeout was reached: [swarmapi.ausplots.aekos.org.au:80] Connection timed out after 10001 milliseconds
>
> #view module:
> my.data$struct.summ
NULL
>
> #get site info, veg vouchers and veg point intercept for all available plots:
> ## Not run: get_ausplots()
>
> #get a species by sites table:
> my.data <- get_ausplots(my.Plot_IDs=c("SATFLB0004", "QDAMGD0022", "NTASTU0002"))
Timeout was reached: [swarmapi.ausplots.aekos.org.au:80] Connection timed out after 10000 milliseconds
>
> species_table(my.data$veg.PI, m_kind="percent_cover", cover_type="PFC", species_name="SN")
Error in species_table(my.data$veg.PI, m_kind = "percent_cover", cover_type = "PFC", :
veg.PI must be a data.frame
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘start_guide.Rmd’ using rmarkdown
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-7
Loading required package: maps
Loading required package: mapdata
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Warning in block_exec(params) :
Failed to tidy R code in chunk 'fig1'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 87-89 (start_guide.Rmd)
Error: processing vignette 'start_guide.Rmd' failed with diagnostics:
The input 'my.ausplots.object' must contain $site.info data to generate a map!
--- failed re-building ‘start_guide.Rmd’
SUMMARY: processing the following file failed:
‘start_guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64