CRAN Package Check Results for Package YuGene

Last updated on 2021-04-15 17:47:56 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.6 10.36 93.75 104.11 OK
r-devel-linux-x86_64-debian-gcc 1.1.6 8.18 71.07 79.25 OK
r-devel-linux-x86_64-fedora-clang 1.1.6 144.72 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1.6 133.20 ERROR
r-devel-windows-ix86+x86_64 1.1.6 25.00 117.00 142.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.1.6 OK
r-patched-linux-x86_64 1.1.6 9.30 86.87 96.17 OK
r-patched-solaris-x86 1.1.6 186.40 OK
r-release-linux-x86_64 1.1.6 8.95 87.51 96.46 OK
r-release-macos-x86_64 1.1.6 OK
r-release-windows-ix86+x86_64 1.1.6 20.00 106.00 126.00 OK
r-oldrel-macos-x86_64 1.1.6 WARN
r-oldrel-windows-ix86+x86_64 1.1.6 19.00 84.00 103.00 OK

Check Details

Version: 1.1.6
Check: examples
Result: ERROR
    Running examples in ‘YuGene-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: pca.YuGene
    > ### Title: Principal component analysis for the 'YuGene' class.
    > ### Aliases: pca pca.YuGene
    >
    > ### ** Examples
    >
    > #load data
    > data(array)
    >
    > YuGene.data=t(YuGene(t(array$data.all))) # transpose the data to get the samples in columns
    
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    >
    > #PCA on YuGene data, centered by study
    > res.pca.yugene.center = pca(YuGene.data, ncomp = 3, scale = TRUE,
    + center = TRUE, study = array$experiment.all)
    > expl.var = round(res.pca.yugene.center$sdev/sum(res.pca.yugene.center$sdev),4)*100
    >
    > #plot of the results, one color per cell-type, one shape per study
    > plot(res.pca.yugene.center$x[,1],res.pca.yugene.center$x[,2],
    + pch = as.numeric(array$experiment.all),
    + col = as.numeric(array$type.all)+1, lwd = 2,
    + cex = 1.5, cex.lab = 1.5,xlab=paste("PC1:",expl.var[1],"%"),
    + ylab=paste("PC2:",expl.var[2],"%"))
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'xlim' values
    Calls: plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: package ‘mixOmics’ was built under R version 3.6.1
Flavor: r-oldrel-macos-x86_64