Last updated on 2021-05-14 09:50:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 3.35 | 30.61 | 33.96 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 2.40 | 24.38 | 26.78 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 50.63 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 39.03 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.1.0 | 7.00 | 53.00 | 60.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 1.1.0 | OK | ||||
| r-patched-linux-x86_64 | 1.1.0 | 3.15 | 30.13 | 33.28 | OK | |
| r-patched-solaris-x86 | 1.1.0 | 66.50 | OK | |||
| r-release-linux-x86_64 | 1.1.0 | 3.29 | 29.78 | 33.07 | OK | |
| r-release-macos-x86_64 | 1.1.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.1.0 | 6.00 | 37.00 | 43.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.0 | 6.00 | 40.00 | 46.00 | ERROR |
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘BuildSys-Ex.R’ failed
The error most likely occurred in:
> ### Name: BuildSys-package
> ### Title: System for Building and Debugging C/C++ Dynamic Libraries
> ### Aliases: BuildSys-package BuildSys
> ### Keywords: package debugging programming utilities
>
> ### ** Examples
>
> ProjectFolder <- tempdir()
>
> # Create source file for finite convolution example in "Writing R Extensions"
> lines <- c(
+ "#include <R.h>",
+ "#include <Rinternals.h>",
+ "",
+ "SEXP convolve2(SEXP a, SEXP b)",
+ "{",
+ " int na, nb, nab;",
+ " double *xa, *xb, *xab;",
+ " SEXP ab;",
+ "",
+ " a = PROTECT(coerceVector(a, REALSXP));",
+ " b = PROTECT(coerceVector(b, REALSXP));",
+ " na = length(a); nb = length(b); nab = na + nb - 1;",
+ " ab = PROTECT(allocVector(REALSXP, nab));",
+ " xa = REAL(a); xb = REAL(b); xab = REAL(ab);",
+ " for(int i = 0; i < nab; i++) xab[i] = 0.0;",
+ " for(int i = 0; i < na; i++)",
+ " for(int j = 0; j < nb; j++) xab[i + j] += xa[i] * xb[j];",
+ " UNPROTECT(3);",
+ " return ab;",
+ "}")
>
> SourceFilePath <- paste0(ProjectFolder, "/convolve.c")
> writeLines(lines, SourceFilePath)
>
> # digest need not be loaded but the digest package needs to be installed
> # as it is used to create a digest of the project to track the need for
> # makefile re-creation.
> require(BuildSys)
>
> # create project to build shared library, a flat project with source in current working directory.
> Project <- new("BSysProject", ProjectFolder)
>
> # re-initialise project from current working directory, new("BSysProject") calls this internally
> Project <- initProjectFromFolder(Project, ProjectFolder)
>
> # build the shared library
> make(Project)
make[1]: Entering directory '/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD'
rm convolve.so convolve.o
rm: cannot remove 'convolve.so': No such file or directory
rm: cannot remove 'convolve.o': No such file or directory
make[1]: *** [makefile:26: clean] Error 1
make[1]: Leaving directory '/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD'
make[1]: Entering directory '/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD'
gcc -O0 -g -DDEBUG -D_DEBUG -fPIC -I/data/gannet/ripley/R/R-clang/include -c -o convolve.o convolve.c
g++ -o convolve.so -shared -fPIC convolve.o -L/data/gannet/ripley/R/R-clang/lib -lR
/usr/bin/ld: cannot find -lR
collect2: error: ld returned 1 exit status
make[1]: *** [makefile:21: convolve.so] Error 1
make[1]: Leaving directory '/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD'
BuildSys Project: convolve
Working Folder: /tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/
>
> # get project library path
> libraryPath(Project)
[1] "/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/convolve.so"
>
> # get project source path
> sourcePath(Project)
[1] "/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/"
>
> # get project include path
> includePath(Project)
[1] "/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/"
>
> # get project object path
> objPath(Project)
[1] "/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/"
>
> # get project install library path
> installLibraryPath(Project)
NULL
>
> # get project install include path
> installIncludePath(Project)
NULL
>
> # load the library
> loadLibrary(Project)
Error in dyn.load(libraryPath(.Object)) :
unable to load shared object '/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/convolve.so':
/tmp/RtmpbiW3bL/working_dir/RtmpLp9XJD/convolve.so: cannot open shared object file: No such file or directory
Calls: loadLibrary -> loadLibrary -> .local -> dyn.load
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘BuildSys-Ex.R’ failed
The error most likely occurred in:
> ### Name: BuildSys-package
> ### Title: System for Building and Debugging C/C++ Dynamic Libraries
> ### Aliases: BuildSys-package BuildSys
> ### Keywords: package debugging programming utilities
>
> ### ** Examples
>
> ProjectFolder <- tempdir()
>
> # Create source file for finite convolution example in "Writing R Extensions"
> lines <- c(
+ "#include <R.h>",
+ "#include <Rinternals.h>",
+ "",
+ "SEXP convolve2(SEXP a, SEXP b)",
+ "{",
+ " int na, nb, nab;",
+ " double *xa, *xb, *xab;",
+ " SEXP ab;",
+ "",
+ " a = PROTECT(coerceVector(a, REALSXP));",
+ " b = PROTECT(coerceVector(b, REALSXP));",
+ " na = length(a); nb = length(b); nab = na + nb - 1;",
+ " ab = PROTECT(allocVector(REALSXP, nab));",
+ " xa = REAL(a); xb = REAL(b); xab = REAL(ab);",
+ " for(int i = 0; i < nab; i++) xab[i] = 0.0;",
+ " for(int i = 0; i < na; i++)",
+ " for(int j = 0; j < nb; j++) xab[i + j] += xa[i] * xb[j];",
+ " UNPROTECT(3);",
+ " return ab;",
+ "}")
>
> SourceFilePath <- paste0(ProjectFolder, "/convolve.c")
> writeLines(lines, SourceFilePath)
>
> # digest need not be loaded but the digest package needs to be installed
> # as it is used to create a digest of the project to track the need for
> # makefile re-creation.
> require(BuildSys)
>
> # create project to build shared library, a flat project with source in current working directory.
> Project <- new("BSysProject", ProjectFolder)
>
> # re-initialise project from current working directory, new("BSysProject") calls this internally
> Project <- initProjectFromFolder(Project, ProjectFolder)
>
> # build the shared library
> make(Project)
make[1]: Entering directory '/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H'
rm convolve.so convolve.o
rm: cannot remove 'convolve.so': No such file or directory
rm: cannot remove 'convolve.o': No such file or directory
make[1]: *** [makefile:26: clean] Error 1
make[1]: Leaving directory '/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H'
make[1]: Entering directory '/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H'
gcc -O0 -g -DDEBUG -D_DEBUG -fPIC -I/data/gannet/ripley/R/R-devel/include -c -o convolve.o convolve.c
g++ -o convolve.so -shared -fPIC convolve.o -L/data/gannet/ripley/R/R-devel/lib -lR
/usr/bin/ld: cannot find -lR
collect2: error: ld returned 1 exit status
make[1]: *** [makefile:21: convolve.so] Error 1
make[1]: Leaving directory '/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H'
BuildSys Project: convolve
Working Folder: /tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/
>
> # get project library path
> libraryPath(Project)
[1] "/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/convolve.so"
>
> # get project source path
> sourcePath(Project)
[1] "/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/"
>
> # get project include path
> includePath(Project)
[1] "/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/"
>
> # get project object path
> objPath(Project)
[1] "/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/"
>
> # get project install library path
> installLibraryPath(Project)
NULL
>
> # get project install include path
> installIncludePath(Project)
NULL
>
> # load the library
> loadLibrary(Project)
Error in dyn.load(libraryPath(.Object)) :
unable to load shared object '/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/convolve.so':
/tmp/Rtmp7lLqqw/working_dir/RtmpOken9H/convolve.so: cannot open shared object file: No such file or directory
Calls: loadLibrary -> loadLibrary -> .local -> dyn.load
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in 'BuildSys-Ex.R' failed
The error most likely occurred in:
> ### Name: BuildSys-package
> ### Title: System for Building and Debugging C/C++ Dynamic Libraries
> ### Aliases: BuildSys-package BuildSys
> ### Keywords: package debugging programming utilities
>
> ### ** Examples
>
> ProjectFolder <- tempdir()
>
> # Create source file for finite convolution example in "Writing R Extensions"
> lines <- c(
+ "#include <R.h>",
+ "#include <Rinternals.h>",
+ "",
+ "SEXP convolve2(SEXP a, SEXP b)",
+ "{",
+ " int na, nb, nab;",
+ " double *xa, *xb, *xab;",
+ " SEXP ab;",
+ "",
+ " a = PROTECT(coerceVector(a, REALSXP));",
+ " b = PROTECT(coerceVector(b, REALSXP));",
+ " na = length(a); nb = length(b); nab = na + nb - 1;",
+ " ab = PROTECT(allocVector(REALSXP, nab));",
+ " xa = REAL(a); xb = REAL(b); xab = REAL(ab);",
+ " for(int i = 0; i < nab; i++) xab[i] = 0.0;",
+ " for(int i = 0; i < na; i++)",
+ " for(int j = 0; j < nb; j++) xab[i + j] += xa[i] * xb[j];",
+ " UNPROTECT(3);",
+ " return ab;",
+ "}")
>
> SourceFilePath <- paste0(ProjectFolder, "/convolve.c")
> writeLines(lines, SourceFilePath)
>
> # digest need not be loaded but the digest package needs to be installed
> # as it is used to create a digest of the project to track the need for
> # makefile re-creation.
> require(BuildSys)
>
> # create project to build shared library, a flat project with source in current working directory.
> Project <- new("BSysProject", ProjectFolder)
>
> # re-initialise project from current working directory, new("BSysProject") calls this internally
> Project <- initProjectFromFolder(Project, ProjectFolder)
>
> # build the shared library
> make(Project)
D:/temp/RtmpUlIdHt/convolve.sh: line 3: tee: command not found
Warning in file(CapturePath, "rt") :
cannot open file 'D:/temp/RtmpUlIdHt/convolve.log': No such file or directory
Error in file(CapturePath, "rt") : cannot open the connection
Calls: make -> make -> .local -> runMake -> file
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64