CRAN Package Check Results for Package mlPhaser

Last updated on 2021-06-08 07:48:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.01 2.25 25.87 28.12 NOTE
r-devel-linux-x86_64-debian-gcc 0.01 1.84 20.75 22.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.01 43.89 NOTE
r-devel-linux-x86_64-fedora-gcc 0.01 33.39 NOTE
r-devel-windows-x86_64 0.01 5.00 32.00 37.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 0.01 NOTE
r-patched-linux-x86_64 0.01 2.40 25.53 27.93 NOTE
r-patched-solaris-x86 0.01 51.90 NOTE
r-release-linux-x86_64 0.01 2.13 25.56 27.69 NOTE
r-release-macos-arm64 0.01 NOTE
r-release-macos-x86_64 0.01 NOTE
r-release-windows-ix86+x86_64 0.01 4.00 30.00 34.00 NOTE
r-oldrel-macos-x86_64 0.01 NOTE
r-oldrel-windows-ix86+x86_64 0.01 5.00 28.00 33.00 NOTE

Check Details

Version: 0.01
Check: R code for possible problems
Result: NOTE
    listGenoToTable: no visible binding for global variable 'dummy'
    Undefined global functions or variables:
     dummy
    
    Found the following assignments to the global environment:
    File 'mlPhaser/R/mlPhaser.R':
     assign("validHaploGroups", c(get("validHaploGroups", globalenv()),
     groupStoreList), globalenv())
     assign("validHaploGroups", list(), globalenv())
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.01
Check: Rd line widths
Result: NOTE
    Rd file 'phaseReport.Rd':
     \examples lines wider than 100 characters:
     phaseReport(my.genotypes,haplotypes, haploFreqs, outFormat="all") # outFormat="all" is the default
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.01
Check: R code for possible problems
Result: NOTE
    listGenoToTable: no visible binding for global variable ‘dummy’
    Undefined global functions or variables:
     dummy
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64