Last updated on 2021-07-09 09:53:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 7.14 | 67.78 | 74.92 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 6.00 | 51.42 | 57.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 98.90 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 92.00 | ERROR | |||
| r-devel-windows-x86_64 | 0.1 | 11.00 | 89.00 | 100.00 | ERROR | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.1 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1 | 7.48 | 65.48 | 72.96 | ERROR | |
| r-patched-solaris-x86 | 0.1 | 132.90 | ERROR | |||
| r-release-linux-x86_64 | 0.1 | 8.16 | 65.47 | 73.63 | ERROR | |
| r-release-macos-arm64 | 0.1 | NOTE | ||||
| r-release-macos-x86_64 | 0.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1 | 13.00 | 85.00 | 98.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1 | 16.00 | 87.00 | 103.00 | ERROR |
Version: 0.1
Check: R code for possible problems
Result: NOTE
get.score: no visible global function definition for 'sd'
get.score: no visible global function definition for 'coef'
get.score: no visible global function definition for 'as'
get.score.main: no visible global function definition for 'sd'
get.score.main: no visible global function definition for 'coef'
get.subgroup: no visible global function definition for 'sd'
sample.tte: no visible global function definition for 'runif'
Undefined global functions or variables:
as coef runif sd
Consider adding
importFrom("methods", "as")
importFrom("stats", "coef", "runif", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in 'MMMS-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get.score.main
> ### Title: Calculation of composite scores based on a main-effect model
> ### Aliases: get.score.main
>
> ### ** Examples
>
> # load the dataset
> data(simdat)
> attach(simdat)
>
> # get composite scores using a main-effect model
> main.only=get.score.main(time,event,treat,bio,covar,nfolds=5,alpha=0.5)
Error in glmnet(x, y, weights = weights, offset = offset, lambda = lambda, :
the length of penalty.factor does not match the number of variables
Calls: get.score.main -> cv.glmnet -> cv.glmnet.raw -> glmnet
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘MMMS-Ex.R’ failed
The error most likely occurred in:
> ### Name: get.score.main
> ### Title: Calculation of composite scores based on a main-effect model
> ### Aliases: get.score.main
>
> ### ** Examples
>
> # load the dataset
> data(simdat)
> attach(simdat)
>
> # get composite scores using a main-effect model
> main.only=get.score.main(time,event,treat,bio,covar,nfolds=5,alpha=0.5)
Error in glmnet(x, y, weights = weights, offset = offset, lambda = lambda, :
the length of penalty.factor does not match the number of variables
Calls: get.score.main -> cv.glmnet -> cv.glmnet.raw -> glmnet
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘MMMS-Ex.R’ failed
The error most likely occurred in:
> ### Name: get.score
> ### Title: Calculation of composite scores based on an interaction model
> ### Aliases: get.score
>
> ### ** Examples
>
> # load the dataset
> data(simdat)
> attach(simdat)
>
> # get composite scores using an interaction model
> score = get.score(time,event,treat,bio,covar,nfolds=5,alpha=0.5,
+ pos.direction=FALSE)
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Warning: from glmnet Fortran code (error code -30000); Numerical error at 0th lambda value; solutions for larger values of lambda returned
Warning in getcoef(fit, nvars, nx, vnames) :
an empty model has been returned; probably a convergence issue
Error in intI(j, n = d[2], dn[[2]], give.dn = FALSE) :
index larger than maximal 0
Calls: get.score ... callGeneric -> eval -> eval -> [ -> [ -> subCsp_ij -> intI
Execution halted
Flavor: r-patched-solaris-x86