Running examples in ‘tidyMicro-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alpha_div
> ### Title: Alpha Diversity Calculations for tidy_micro
> ### Aliases: alpha_div
> 
> ### ** Examples
> 
> data(bpd_phy); data(bpd_cla); data(bpd_ord); data(bpd_fam); data(bpd_clin)
> otu_tabs = list(Phylum = bpd_phy, Class = bpd_cla,
+ Order = bpd_ord, Family = bpd_fam)
> 
> set <- tidy_micro(otu_tabs = otu_tabs, clinical = bpd_clin) %>%
+ filter(day == 7) ## Only including the first week
Error in `dplyr::select()`:
! Can't subset `.data` outside of a data mask context.
Backtrace:
     ▆
  1. ├─tidy_micro(otu_tabs = otu_tabs, clinical = bpd_clin) %>% ...
  2. ├─dplyr::filter(., day == 7)
  3. ├─tidyMicro::tidy_micro(otu_tabs = otu_tabs, clinical = bpd_clin)
  4. │ ├─base::suppressWarnings(...)
  5. │ │ └─base::withCallingHandlers(...)
  6. │ └─otu_tabs %>% ...
  7. ├─plyr::ldply(., mul_otu_long, .meta = clinical, .id = "Table")
  8. │ └─plyr::llply(...)
  9. │   ├─base::structure(lapply(pieces, .fun, ...), dim = dim(pieces))
 10. │   └─base::lapply(pieces, .fun, ...)
 11. │     └─tidyMicro FUN(X[[i]], ...)
 12. │       └─... %>% ...
 13. ├─dplyr::select(., rlang::.data$Lib, rlang::.data$Taxa, dplyr::everything())
 14. ├─dplyr:::select.data.frame(...)
 15. │ ├─dplyr:::tidyselect_fix_call(...)
 16. │ │ └─base::withCallingHandlers(...)
 17. │ └─tidyselect::eval_select(expr(c(...)), .data)
 18. │   └─tidyselect:::eval_select_impl(...)
 19. │     ├─tidyselect:::with_subscript_errors(...)
 20. │     │ ├─base::tryCatch(...)
 21. │     │ │ └─base tryCatchList(expr, classes, parentenv, handlers)
 22. │     │ │   └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
 23. │     │ │     └─base doTryCatch(return(expr), name, parentenv, handler)
 24. │     │ └─tidyselect:::instrument_base_errors(expr)
 25. │     │   └─base::withCallingHandlers(...)
 26. │     └─tidyselect:::vars_select_eval(...)
 27. │       └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 28. │         └─tidyselect:::eval_c(expr, data_mask, context_mask)
 29. │           └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 30. │             └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
 31. │               └─tidyselect:::eval_context(expr, context_mask)
 32. │                 └─rlang::eval_tidy(expr, context_mask)
 33. ├─rlang::.data$Lib
 34. └─rlang:::`$.rlang_fake_data_pronoun`(rlang::.data, Lib)
 35.   └─rlang:::stop_fake_data_subset(call)
 36.     └─rlang::abort(...)
Execution halted