CRAN Package Check Results for Package algaeClassify

Last updated on 2022-03-09 06:49:59 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 6.76 61.24 68.00 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.0 5.66 47.88 53.54 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.0 83.57 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.0 71.02 ERROR
r-devel-windows-x86_64-new-UL 1.2.0 58.00 86.00 144.00 ERROR
r-devel-windows-x86_64-new-TK 1.2.0 ERROR
r-patched-linux-x86_64 1.2.0 6.01 57.57 63.58 OK
r-release-linux-x86_64 1.2.0 OK
r-release-macos-arm64 1.2.0 NOTE
r-release-macos-x86_64 1.2.0 NOTE
r-release-windows-ix86+x86_64 1.2.0 17.00 71.00 88.00 OK
r-oldrel-macos-x86_64 1.2.0 NOTE
r-oldrel-windows-ix86+x86_64 1.2.0 16.00 70.00 86.00 OK

Check Details

Version: 1.2.0
Check: examples
Result: ERROR
    Running examples in 'algaeClassify-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: phyto_ts_aggregate
    > ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
    > ### grouping variables can be given: e.g. genus, species, stationid,
    > ### depth range. If no abundance var is given, will aggregate to
    > ### presence/absence of grouping vars.
    > ### Aliases: phyto_ts_aggregate
    >
    > ### ** Examples
    >
    > data(lakegeneva)
    > lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
    > lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
    + GroupingVar1='genus')
    Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) :
     argument 'x' is missing -- it has been renamed from 'formula'
    Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘taxize’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.0
Check: examples
Result: ERROR
    Running examples in ‘algaeClassify-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: phyto_ts_aggregate
    > ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
    > ### grouping variables can be given: e.g. genus, species, stationid,
    > ### depth range. If no abundance var is given, will aggregate to
    > ### presence/absence of grouping vars.
    > ### Aliases: phyto_ts_aggregate
    >
    > ### ** Examples
    >
    > data(lakegeneva)
    > lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
    > lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
    + GroupingVar1='genus')
    Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) :
     argument 'x' is missing -- it has been renamed from 'formula'
    Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK