Last updated on 2023-04-10 10:57:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.0 | 25.63 | 332.67 | 358.30 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 2.3.0 | 20.16 | 247.24 | 267.40 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 2.3.0 | 438.29 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.0 | 439.33 | WARN | |||
| r-devel-windows-x86_64 | 2.3.0 | 252.00 | 484.00 | 736.00 | ERROR | |
| r-patched-linux-x86_64 | 2.3.0 | 34.64 | 319.60 | 354.24 | WARN | |
| r-release-linux-x86_64 | 2.3.0 | 24.42 | 300.31 | 324.73 | OK | |
| r-release-macos-arm64 | 2.3.0 | 91.00 | OK | |||
| r-release-macos-x86_64 | 2.3.0 | 206.00 | OK | |||
| r-release-windows-x86_64 | 2.3.0 | 224.00 | 385.00 | 609.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.3.0 | 103.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.3.0 | 159.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.3.0 | 43.00 | 363.00 | 406.00 | ERROR |
Version: 2.3.0
Check: S3 generic/method consistency
Result: WARN
Math2:
function(x, digits)
Math2.trackdata:
function(x)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 2.3.0
Check: Rd files
Result: NOTE
checkRd: (-1) cbind.trackdata.Rd:20: Escaped LaTeX specials: \$
checkRd: (-1) cbind.trackdata.Rd:24: Escaped LaTeX specials: \$ \$
checkRd: (-1) cbind.trackdata.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) cbind.trackdata.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) cbind.trackdata.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) crplot.Rd:72: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) crplot.Rd:73: Escaped LaTeX specials: \$
checkRd: (-1) crplot.Rd:74: Escaped LaTeX specials: \$
checkRd: (-1) crplot.Rd:75: Escaped LaTeX specials: \$
checkRd: (-1) crplot.Rd:86: Escaped LaTeX specials: \$ \$
checkRd: (-1) dbtopower.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) demo.all.f0.Rd:8: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) demo.all.f0.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) demo.all.fm.Rd:8: Escaped LaTeX specials: \$
checkRd: (-1) demo.all.rms.Rd:8: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) demo.all.rms.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) demo.vowels.f0.Rd:7: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) demo.vowels.f0.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) demo.vowels.fm.Rd:7: Escaped LaTeX specials: \$
checkRd: (-1) epgplot.Rd:27: Escaped LaTeX specials: \$
checkRd: (-1) epgplot.Rd:56: Escaped LaTeX specials: \$
checkRd: (-1) fapply.Rd:18: Escaped LaTeX specials: \$
checkRd: (-1) fapply.Rd:39: Escaped LaTeX specials: \$
checkRd: (-1) locus.Rd:38: Escaped LaTeX specials: \$
checkRd: (-1) mu.colour.Rd:60: Escaped LaTeX specials: \$ \$ \$ \$
checkRd: (-1) mu.colour.Rd:61: Escaped LaTeX specials: \$ \$
checkRd: (-1) plot.spectral.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) rbind.trackdata.Rd:20: Escaped LaTeX specials: \$
checkRd: (-1) rbind.trackdata.Rd:25: Escaped LaTeX specials: \$ \$
checkRd: (-1) rbind.trackdata.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) rbind.trackdata.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) rbind.trackdata.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) trackdata.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) trackdata.Rd:12: Escaped LaTeX specials: \$
checkRd: (-1) trackdata.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) trackdata.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) tracktimes.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) trapply.Rd:32: Escaped LaTeX specials: \$
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [249s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("emuR")
Loading required package: emuR
Attaching package: 'emuR'
The following object is masked from 'package:base':
norm
[1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\RtmpWUR132\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
INFO: Rewriting 7 _annot.json files to file system...
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INFO: parsing 14 fms segments/events
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Read 16 items
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[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (29)
• skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_emuR-database.R:652:3'): rename emuDB works correctly ──────────
Error: no such table: emu_db
Backtrace:
▆
1. └─emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
2. ├─DBI::dbExecute(...)
3. └─DBI::dbExecute(...)
4. ├─DBI::dbSendStatement(conn, statement, ...)
5. └─DBI::dbSendStatement(conn, statement, ...)
6. ├─DBI::dbSendQuery(conn, statement, ...)
7. └─RSQLite::dbSendQuery(conn, statement, ...)
8. └─RSQLite (local) .local(conn, statement, ...)
9. ├─methods::new(...)
10. │ ├─methods::initialize(value, ...)
11. │ └─methods::initialize(value, ...)
12. └─RSQLite:::result_create(conn@ptr, statement)
[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [208s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("emuR")
Loading required package: emuR
Attaching package: 'emuR'
The following object is masked from 'package:base':
norm
[1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\RtmpE1Mjtk\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
INFO: Rewriting 7 _annot.json files to file system...
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INFO: parsing 14 fms segments/events
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Read 16 items
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[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (6)
• empty test (29)
• skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_emuR-database.R:652:3'): rename emuDB works correctly ──────────
Error: no such table: emu_db
Backtrace:
▆
1. └─emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
2. ├─DBI::dbExecute(...)
3. └─DBI::dbExecute(...)
4. ├─DBI::dbSendStatement(conn, statement, ...)
5. └─DBI::dbSendStatement(conn, statement, ...)
6. ├─DBI::dbSendQuery(conn, statement, ...)
7. └─RSQLite::dbSendQuery(conn, statement, ...)
8. └─RSQLite (local) .local(conn, statement, ...)
9. ├─methods::new(...)
10. │ ├─methods::initialize(value, ...)
11. │ └─methods::initialize(value, ...)
12. └─RSQLite:::result_create(conn@ptr, statement)
[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.3.0
Check: dependencies in R code
Result: NOTE
Initiating curl with CURL_SSL_BACKEND: openssl
Flavor: r-oldrel-windows-ix86+x86_64
Version: 2.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [196s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("emuR")
Loading required package: emuR
Attaching package: 'emuR'
The following object is masked from 'package:base':
norm
[1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\Rtmp009yH5\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
INFO: Rewriting 7 _annot.json files to file system...
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INFO: parsing 14 fms segments/events
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INFO: parsing 14 fms segments/events
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Read 16 items
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Read 20 records
[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
== Skipped tests ===============================================================
* On CRAN (6)
* empty test (29)
* skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
== Failed tests ================================================================
-- Error ('test_emuR-database.R:652:3'): rename emuDB works correctly ----------
Error: no such table: emu_db
Backtrace:
x
1. \-emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
2. +-DBI::dbExecute(...)
3. \-DBI::dbExecute(...)
4. +-DBI::dbSendStatement(conn, statement, ...)
5. \-DBI::dbSendStatement(conn, statement, ...)
6. +-DBI::dbSendQuery(conn, statement, ...)
7. \-RSQLite::dbSendQuery(conn, statement, ...)
8. \-RSQLite (local) .local(conn, statement, ...)
9. +-methods::new(...)
10. | +-methods::initialize(value, ...)
11. | \-methods::initialize(value, ...)
12. \-RSQLite:::result_create(conn@ptr, statement)
[ FAIL 1 | WARN 225 | SKIP 37 | PASS 845 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64