Last updated on 2018-02-20 08:48:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-7 | 4.36 | 71.14 | 75.50 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0-7 | 3.69 | 60.55 | 64.24 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0-7 | 60.43 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-7 | 58.51 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0-7 | 10.00 | 99.00 | 109.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0-7 | 3.07 | 78.62 | 81.69 | NOTE | |
| r-patched-solaris-x86 | 1.0-7 | 116.20 | NOTE | |||
| r-release-linux-x86_64 | 1.0-7 | 2.44 | 78.33 | 80.77 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.0-7 | 11.00 | 102.00 | 113.00 | NOTE | |
| r-release-osx-x86_64 | 1.0-7 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0-7 | 12.00 | 136.00 | 148.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.0-7 | NOTE |
Version: 1.0-7
Check: R code for possible problems
Result: NOTE
.viterbiTrainingEmission,contHMM-list-list: no visible global function
definition for ‘var’
sampleObs,tDist-numeric: no visible global function definition for ‘rt’
Undefined global functions or variables:
rt var
Consider adding
importFrom("stats", "rt", "var")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.0-7
Check: compiled code
Result: NOTE
File ‘tileHMM/libs/tileHMM.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0-7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘preprocessCore’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.0-7
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Error: processing vignette 'tileHMM.Rnw' failed with diagnostics:
chunk 3
Error in loadNamespace(name) :
there is no package called ‘preprocessCore’
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0-7
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘tileHMM.Rnw’
...
> h3k27.data <- as.matrix(simChIP[, 7:14])
> h3k27.data <- log(h3k27.data, 2)
> h3k27.norm <- preprocessCore::normalize.quantiles(h3k27.data)
When sourcing ‘tileHMM.R’:
Error: there is no package called ‘preprocessCore’
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0-7
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Error: processing vignette 'tileHMM.Rnw' failed with diagnostics:
chunk 3
Error in loadNamespace(name) :
there is no package called ‘preprocessCore’
Execution halted
Flavor: r-release-osx-x86_64