CRAN Package Check Results for Package largeVis

Last updated on 2018-06-11 11:50:36 CEST.

Additional issues

clang-ASAN

Check Details

Version: 0.2.1.1
Check: installed package size
Result: NOTE
     installed size is 19.0Mb
     sub-directories of 1Mb or more:
     libs 13.9Mb
     testdata 1.8Mb
     vignettedata 2.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.1.1
Check: examples
Result: ERROR
    Running examples in ‘largeVis-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: as.dendrogram.hdbscan
    > ### Title: as.dendrogram.hdbscan
    > ### Aliases: as.dendrogram.hdbscan
    >
    > ### ** Examples
    >
    > data(iris)
    > vis <- largeVis(t(iris[,1:4]), K = 20, sgd_batches = 1, threads = 1)
    Error: C stack usage 195007380 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/25s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(largeVis)
     Loading required package: Matrix
     largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
     >
     > test_check("largeVis")
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     ── 1. Failure: max threshold is sufficient to find all neighbors (@test_b_neighb
     `score` is not more than M * ncol(dat) - 1. Difference: -736
    
     Error: C stack usage 194941844 is too close to the limit
     ── 2. Error: exploration is not negative (@test_b_neighbors.R#64) ─────────────
     missing value where TRUE/FALSE needed
     1: randomProjectionTreeSearch(dat, K = M, n_trees = 1, tree_threshold = ncol(dat), max_iter = 0,
     threads = 2, verbose = FALSE) at testthat/test_b_neighbors.R:64
     2: randomProjectionTreeSearch.matrix(dat, K = M, n_trees = 1, tree_threshold = ncol(dat),
     max_iter = 0, threads = 2, verbose = FALSE)
    
     Error: C stack usage 194941844 is too close to the limit
     ── 3. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 109 - 0 == 109
    
     ── 4. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     `score` is not more than M * ncol(dat) - 1. Difference: -737
    
     Error: C stack usage 194941844 is too close to the limit
     ── 5. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     sum(neighbors == -1) is not strictly less than 20. Difference: 71
    
     ── 6. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 36 - 0 == 36
    
     ── 7. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     `score` is not more than M * ncol(dat) - 1. Difference: -718
    
     Error: C stack usage 194941844 is too close to the limit
     ── 8. Failure: Can determine iris neighbors accurately, Euclidean (@test_b_neigh
     sum(neighbors != bests, na.rm = TRUE) is not less than 5. Difference: 734
    
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
     ── 9. Failure: With a bigger dataset, performance is as expected (@test_b_neighb
     iters= 5 is not less than `oldscore`. Difference: 8
    
     Error: C stack usage 194941844 is too close to the limit
     ── 10. Failure: With a bigger dataset, performance is as expected (@test_b_neigh
     iters= 20 is not less than `oldscore`. Difference: 2
    
     Error: C stack usage 194941844 is too close to the limit
     Error: C stack usage 194941844 is too close to the limit
    
     error: Mat::col(): index out of bounds
    
     error: Mat::col(): index out of bounds
     terminate called recursively
     terminate called after throwing an instance of '
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in unit(c(t, r, b, l), unit) : NAs introduced by coercion
    Error: C stack usage 309236628 is too close to the limit
    Quitting from lines 190-214 (momentumandusedata.Rmd)
    Error: processing vignette 'momentumandusedata.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    Execution halted
Flavor: r-patched-solaris-x86