CRAN Package Check Results for Package LVMMCOR

Last updated on 2018-06-17 19:49:47 CEST.

Check Details

Version: 0.01.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.01.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.01.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     LVMMCOR.default
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.01.1
Check: R code for possible problems
Result: NOTE
    LVMMCOR.default : f: no visible global function definition for ‘pnorm’
    LVMMCOR.default : f: no visible global function definition for ‘dnorm’
    LVMMCOR.default: no visible global function definition for ‘nlminb’
    LVMMCOR.default: no visible global function definition for ‘fdHess’
    LVMMCOR.default: no visible global function definition for ‘ginv’
    Undefined global functions or variables:
     dnorm fdHess ginv nlminb pnorm
    Consider adding
     importFrom("stats", "dnorm", "nlminb", "pnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.01.1
Check: examples
Result: ERROR
    Running examples in ‘LVMMCOR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: LVMMCOR-package
    > ### Title: A Latent Variable Model for Mixed Continuous and Ordinal
    > ### Responses.
    > ### Aliases: LVMMCOR-package
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > data("Bahrami")
    > gender<-Bahrami$ GENDER
    > age<-Bahrami$AGE
    > duration <-Bahrami$ DURATION
    > y<-Bahrami$ STEATOS
    > z<-Bahrami$ BMI
    > sbp<-Bahrami$ SBP
    > X=cbind(gender,age,duration ,sbp)
    > P<-lm(z~X)[[1]]
    > names(P)<-paste("Con_",names(P),sep="")
    > Q<-polr(factor(y)~X)[[1]]
    Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
    > names(Q)<-paste("Ord_",names(Q),sep="")
    > W=c(cor(y,z),polr(factor(y)~X)[[2]],var(z))
    Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
    > names(W)=c("Corr","cut_point1","cut_point2","Variance of Continous Response")
    > ini=c(P,Q,W)
    > p=5;
    > q=4;
    > LVMMCOR(ini,X=X,y=y,z=z,p=p,q=q)
    Error in UseMethod("LVMMCOR") :
     no applicable method for 'LVMMCOR' applied to an object of class "c('double', 'numeric')"
    Calls: LVMMCOR
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64