Last updated on 2019-01-26 15:47:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 7.19 | 63.87 | 71.06 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 6.19 | 50.52 | 56.71 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 84.29 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 80.22 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1.4 | 10.00 | 96.00 | 106.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.4 | 8.17 | 60.29 | 68.46 | NOTE | |
| r-patched-solaris-x86 | 1.1.4 | 117.60 | NOTE | |||
| r-release-linux-x86_64 | 1.1.4 | 7.98 | 59.80 | 67.78 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.1.4 | 14.00 | 73.00 | 87.00 | NOTE | |
| r-release-osx-x86_64 | 1.1.4 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.4 | 12.00 | 75.00 | 87.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1.4 | NOTE |
Version: 1.1.4
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: ‘metafor’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.4
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
print.PermMeta
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1.4
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
‘PermMeta.LnOR.CDC’ ‘PermMeta.LnOR.Hist’ ‘PermMeta.LnOR.qqnorm’
Found the platform-specific device:
‘x11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Armitage: no visible global function definition for ‘pchisq’
Armitage.MCPerm: no visible global function definition for ‘pchisq’
Armitage.MCPerm: no visible global function definition for ‘rhyper’
Armitage.TradPerm: no visible global function definition for ‘pchisq’
HW.test: no visible global function definition for ‘pchisq’
I2.MCPerm: no visible global function definition for ‘rma’
I2.MCPerm: no visible global function definition for ‘rma.mh’
I2.MCPerm: no visible global function definition for ‘rma.peto’
I2.MCPerm: no visible global function definition for ‘rhyper’
I2.TradPerm: no visible global function definition for ‘rma’
I2.TradPerm: no visible global function definition for ‘rma.mh’
I2.TradPerm: no visible global function definition for ‘rma.peto’
OR.MCPerm: no visible global function definition for ‘rhyper’
PermMeta.Hist: no visible global function definition for ‘hist’
PermMeta.Hist: no visible global function definition for ‘points’
PermMeta.Hist: no visible global function definition for ‘arrows’
PermMeta.Hist: no visible global function definition for ‘legend’
PermMeta.LnOR.CDC: no visible binding for global variable ‘var’
PermMeta.LnOR.CDC: no visible global function definition for ‘par’
PermMeta.LnOR.CDC: no visible global function definition for ‘plot’
PermMeta.LnOR.CDC: no visible global function definition for ‘ecdf’
PermMeta.LnOR.CDC: no visible global function definition for ‘rnorm’
PermMeta.LnOR.CDC: no visible global function definition for ‘legend’
PermMeta.LnOR.CDC: no visible global function definition for ‘mtext’
PermMeta.LnOR.CDC: no visible global function definition for ‘x11’
PermMeta.LnOR.Hist: no visible binding for global variable ‘var’
PermMeta.LnOR.Hist: no visible global function definition for ‘par’
PermMeta.LnOR.Hist: no visible global function definition for ‘hist’
PermMeta.LnOR.Hist: no visible global function definition for ‘points’
PermMeta.LnOR.Hist: no visible global function definition for ‘arrows’
PermMeta.LnOR.Hist: no visible global function definition for ‘legend’
PermMeta.LnOR.Hist: no visible global function definition for ‘mtext’
PermMeta.LnOR.Hist: no visible global function definition for ‘x11’
PermMeta.LnOR.boxplot: no visible binding for global variable ‘var’
PermMeta.LnOR.boxplot: no visible global function definition for
‘boxplot’
PermMeta.LnOR.boxplot: no visible global function definition for
‘legend’
PermMeta.LnOR.boxplot: no visible global function definition for
‘points’
PermMeta.LnOR.boxplot: no visible global function definition for ‘text’
PermMeta.LnOR.qqnorm: no visible global function definition for ‘par’
PermMeta.LnOR.qqnorm: no visible global function definition for
‘qqnorm’
PermMeta.LnOR.qqnorm: no visible global function definition for
‘qqline’
PermMeta.LnOR.qqnorm: no visible binding for global variable ‘qnorm’
PermMeta.LnOR.qqnorm: no visible global function definition for ‘mtext’
PermMeta.LnOR.qqnorm: no visible global function definition for ‘x11’
PermMeta.boxplot: no visible global function definition for ‘par’
PermMeta.boxplot: no visible global function definition for ‘boxplot’
PermMeta.boxplot: no visible global function definition for ‘points’
PermMeta.boxplot: no visible global function definition for ‘mtext’
PermMeta.boxplot: no visible global function definition for ‘legend’
Q.MCPerm: no visible global function definition for ‘rma’
Q.MCPerm: no visible global function definition for ‘rma.mh’
Q.MCPerm: no visible global function definition for ‘rma.peto’
Q.MCPerm: no visible global function definition for ‘rhyper’
Q.TradPerm: no visible global function definition for ‘rma’
Q.TradPerm: no visible global function definition for ‘rma.mh’
Q.TradPerm: no visible global function definition for ‘rma.peto’
VS.Allele.CDC: no visible global function definition for ‘par’
VS.Allele.CDC: no visible global function definition for ‘plot’
VS.Allele.CDC: no visible global function definition for ‘ecdf’
VS.Allele.CDC: no visible global function definition for ‘legend’
VS.Allele.CDC: no visible global function definition for ‘mtext’
VS.Allele.Hist: no visible global function definition for ‘par’
VS.Allele.Hist: no visible global function definition for ‘hist’
VS.Allele.Hist: no visible global function definition for ‘legend’
VS.Allele.Hist: no visible global function definition for ‘mtext’
VS.Allele.QQ: no visible global function definition for ‘par’
VS.Allele.QQ: no visible global function definition for ‘qqplot’
VS.Allele.QQ: no visible global function definition for ‘abline’
VS.Allele.QQ: no visible global function definition for ‘mtext’
VS.CDC: no visible global function definition for ‘plot’
VS.CDC: no visible global function definition for ‘ecdf’
VS.CDC: no visible global function definition for ‘par’
VS.CDC: no visible global function definition for ‘legend’
VS.Genotype.CDC: no visible global function definition for ‘par’
VS.Genotype.CDC: no visible global function definition for ‘plot’
VS.Genotype.CDC: no visible global function definition for ‘ecdf’
VS.Genotype.CDC: no visible global function definition for ‘legend’
VS.Genotype.CDC: no visible global function definition for ‘mtext’
VS.Genotype.Hist: no visible global function definition for ‘par’
VS.Genotype.Hist: no visible global function definition for ‘hist’
VS.Genotype.Hist: no visible global function definition for ‘legend’
VS.Genotype.Hist: no visible global function definition for ‘mtext’
VS.Genotype.QQ: no visible global function definition for ‘par’
VS.Genotype.QQ: no visible global function definition for ‘qqplot’
VS.Genotype.QQ: no visible global function definition for ‘abline’
VS.Genotype.QQ: no visible global function definition for ‘mtext’
VS.Hist: no visible global function definition for ‘hist’
VS.Hist: no visible global function definition for ‘par’
VS.Hist: no visible global function definition for ‘legend’
VS.KS: no visible global function definition for ‘ks.test’
VS.KS: no visible global function definition for ‘plot’
VS.KS: no visible global function definition for ‘abline’
VS.QQ: no visible global function definition for ‘qqplot’
VS.QQ: no visible global function definition for ‘abline’
chisq.MCPerm: no visible global function definition for ‘chisq.test’
chisq.MCPerm: no visible global function definition for ‘rhyper’
chisq.TradPerm: no visible global function definition for ‘chisq.test’
fisher.MCPerm: no visible global function definition for ‘fisher.test’
fisher.MCPerm: no visible global function definition for ‘rhyper’
fisher.TradPerm: no visible global function definition for
‘fisher.test’
meta: no visible global function definition for ‘rma’
meta: no visible global function definition for ‘rma.mh’
meta: no visible global function definition for ‘rma.peto’
meta.MCPerm: no visible global function definition for ‘rma’
meta.MCPerm: no visible global function definition for ‘rma.mh’
meta.MCPerm: no visible global function definition for ‘rma.peto’
meta.MCPerm: no visible global function definition for ‘rhyper’
meta.TradPerm: no visible global function definition for ‘rma’
meta.TradPerm: no visible global function definition for ‘rma.mh’
meta.TradPerm: no visible global function definition for ‘rma.peto’
pearson_scatter: no visible global function definition for ‘cor.test’
pearson_scatter: no visible global function definition for ‘plot’
pearson_scatter: no visible global function definition for ‘legend’
pearson_scatter: no visible global function definition for ‘abline’
permuteGenotypeCount: no visible global function definition for
‘rhyper’
Undefined global functions or variables:
abline arrows boxplot chisq.test cor.test ecdf fisher.test hist
ks.test legend mtext par pchisq plot points qnorm qqline qqnorm
qqplot rhyper rma rma.mh rma.peto rnorm text var x11
Consider adding
importFrom("grDevices", "x11")
importFrom("graphics", "abline", "arrows", "boxplot", "hist", "legend",
"mtext", "par", "plot", "points", "text")
importFrom("stats", "chisq.test", "cor.test", "ecdf", "fisher.test",
"ks.test", "pchisq", "qnorm", "qqline", "qqnorm", "qqplot",
"rhyper", "rnorm", "var")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1.4
Check: R code for possible problems
Result: NOTE
Armitage: no visible global function definition for 'pchisq'
Armitage.MCPerm: no visible global function definition for 'pchisq'
Armitage.MCPerm: no visible global function definition for 'rhyper'
Armitage.TradPerm: no visible global function definition for 'pchisq'
HW.test: no visible global function definition for 'pchisq'
I2.MCPerm: no visible global function definition for 'rma'
I2.MCPerm: no visible global function definition for 'rma.mh'
I2.MCPerm: no visible global function definition for 'rma.peto'
I2.MCPerm: no visible global function definition for 'rhyper'
I2.TradPerm: no visible global function definition for 'rma'
I2.TradPerm: no visible global function definition for 'rma.mh'
I2.TradPerm: no visible global function definition for 'rma.peto'
OR.MCPerm: no visible global function definition for 'rhyper'
PermMeta.Hist: no visible global function definition for 'hist'
PermMeta.Hist: no visible global function definition for 'points'
PermMeta.Hist: no visible global function definition for 'arrows'
PermMeta.Hist: no visible global function definition for 'legend'
PermMeta.LnOR.CDC: no visible binding for global variable 'var'
PermMeta.LnOR.CDC: no visible global function definition for 'par'
PermMeta.LnOR.CDC: no visible global function definition for 'plot'
PermMeta.LnOR.CDC: no visible global function definition for 'ecdf'
PermMeta.LnOR.CDC: no visible global function definition for 'rnorm'
PermMeta.LnOR.CDC: no visible global function definition for 'legend'
PermMeta.LnOR.CDC: no visible global function definition for 'mtext'
PermMeta.LnOR.CDC: no visible global function definition for 'x11'
PermMeta.LnOR.Hist: no visible binding for global variable 'var'
PermMeta.LnOR.Hist: no visible global function definition for 'par'
PermMeta.LnOR.Hist: no visible global function definition for 'hist'
PermMeta.LnOR.Hist: no visible global function definition for 'points'
PermMeta.LnOR.Hist: no visible global function definition for 'arrows'
PermMeta.LnOR.Hist: no visible global function definition for 'legend'
PermMeta.LnOR.Hist: no visible global function definition for 'mtext'
PermMeta.LnOR.Hist: no visible global function definition for 'x11'
PermMeta.LnOR.boxplot: no visible binding for global variable 'var'
PermMeta.LnOR.boxplot: no visible global function definition for
'boxplot'
PermMeta.LnOR.boxplot: no visible global function definition for
'legend'
PermMeta.LnOR.boxplot: no visible global function definition for
'points'
PermMeta.LnOR.boxplot: no visible global function definition for 'text'
PermMeta.LnOR.qqnorm: no visible global function definition for 'par'
PermMeta.LnOR.qqnorm: no visible global function definition for
'qqnorm'
PermMeta.LnOR.qqnorm: no visible global function definition for
'qqline'
PermMeta.LnOR.qqnorm: no visible binding for global variable 'qnorm'
PermMeta.LnOR.qqnorm: no visible global function definition for 'mtext'
PermMeta.LnOR.qqnorm: no visible global function definition for 'x11'
PermMeta.boxplot: no visible global function definition for 'par'
PermMeta.boxplot: no visible global function definition for 'boxplot'
PermMeta.boxplot: no visible global function definition for 'points'
PermMeta.boxplot: no visible global function definition for 'mtext'
PermMeta.boxplot: no visible global function definition for 'legend'
Q.MCPerm: no visible global function definition for 'rma'
Q.MCPerm: no visible global function definition for 'rma.mh'
Q.MCPerm: no visible global function definition for 'rma.peto'
Q.MCPerm: no visible global function definition for 'rhyper'
Q.TradPerm: no visible global function definition for 'rma'
Q.TradPerm: no visible global function definition for 'rma.mh'
Q.TradPerm: no visible global function definition for 'rma.peto'
VS.Allele.CDC: no visible global function definition for 'par'
VS.Allele.CDC: no visible global function definition for 'plot'
VS.Allele.CDC: no visible global function definition for 'ecdf'
VS.Allele.CDC: no visible global function definition for 'legend'
VS.Allele.CDC: no visible global function definition for 'mtext'
VS.Allele.Hist: no visible global function definition for 'par'
VS.Allele.Hist: no visible global function definition for 'hist'
VS.Allele.Hist: no visible global function definition for 'legend'
VS.Allele.Hist: no visible global function definition for 'mtext'
VS.Allele.QQ: no visible global function definition for 'par'
VS.Allele.QQ: no visible global function definition for 'qqplot'
VS.Allele.QQ: no visible global function definition for 'abline'
VS.Allele.QQ: no visible global function definition for 'mtext'
VS.CDC: no visible global function definition for 'plot'
VS.CDC: no visible global function definition for 'ecdf'
VS.CDC: no visible global function definition for 'par'
VS.CDC: no visible global function definition for 'legend'
VS.Genotype.CDC: no visible global function definition for 'par'
VS.Genotype.CDC: no visible global function definition for 'plot'
VS.Genotype.CDC: no visible global function definition for 'ecdf'
VS.Genotype.CDC: no visible global function definition for 'legend'
VS.Genotype.CDC: no visible global function definition for 'mtext'
VS.Genotype.Hist: no visible global function definition for 'par'
VS.Genotype.Hist: no visible global function definition for 'hist'
VS.Genotype.Hist: no visible global function definition for 'legend'
VS.Genotype.Hist: no visible global function definition for 'mtext'
VS.Genotype.QQ: no visible global function definition for 'par'
VS.Genotype.QQ: no visible global function definition for 'qqplot'
VS.Genotype.QQ: no visible global function definition for 'abline'
VS.Genotype.QQ: no visible global function definition for 'mtext'
VS.Hist: no visible global function definition for 'hist'
VS.Hist: no visible global function definition for 'par'
VS.Hist: no visible global function definition for 'legend'
VS.KS: no visible global function definition for 'ks.test'
VS.KS: no visible global function definition for 'plot'
VS.KS: no visible global function definition for 'abline'
VS.QQ: no visible global function definition for 'qqplot'
VS.QQ: no visible global function definition for 'abline'
chisq.MCPerm: no visible global function definition for 'chisq.test'
chisq.MCPerm: no visible global function definition for 'rhyper'
chisq.TradPerm: no visible global function definition for 'chisq.test'
fisher.MCPerm: no visible global function definition for 'fisher.test'
fisher.MCPerm: no visible global function definition for 'rhyper'
fisher.TradPerm: no visible global function definition for
'fisher.test'
meta: no visible global function definition for 'rma'
meta: no visible global function definition for 'rma.mh'
meta: no visible global function definition for 'rma.peto'
meta.MCPerm: no visible global function definition for 'rma'
meta.MCPerm: no visible global function definition for 'rma.mh'
meta.MCPerm: no visible global function definition for 'rma.peto'
meta.MCPerm: no visible global function definition for 'rhyper'
meta.TradPerm: no visible global function definition for 'rma'
meta.TradPerm: no visible global function definition for 'rma.mh'
meta.TradPerm: no visible global function definition for 'rma.peto'
pearson_scatter: no visible global function definition for 'cor.test'
pearson_scatter: no visible global function definition for 'plot'
pearson_scatter: no visible global function definition for 'legend'
pearson_scatter: no visible global function definition for 'abline'
permuteGenotypeCount: no visible global function definition for
'rhyper'
Undefined global functions or variables:
abline arrows boxplot chisq.test cor.test ecdf fisher.test hist
ks.test legend mtext par pchisq plot points qnorm qqline qqnorm
qqplot rhyper rma rma.mh rma.peto rnorm text var x11
Consider adding
importFrom("grDevices", "x11")
importFrom("graphics", "abline", "arrows", "boxplot", "hist", "legend",
"mtext", "par", "plot", "points", "text")
importFrom("stats", "chisq.test", "cor.test", "ecdf", "fisher.test",
"ks.test", "pchisq", "qnorm", "qqline", "qqnorm", "qqplot",
"rhyper", "rnorm", "var")
to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64