CRAN Package Check Results for Package D2C

Last updated on 2019-04-22 07:46:37 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 10.30 305.26 315.56 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.1 10.54 229.74 240.28 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.1 349.40 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.1 370.25 ERROR
r-devel-windows-ix86+x86_64 1.2.1 28.00 371.00 399.00 ERROR
r-patched-linux-x86_64 1.2.1 10.47 304.04 314.51 ERROR
r-patched-solaris-x86 1.2.1 526.30 ERROR
r-release-linux-x86_64 1.2.1 8.27 396.06 404.33 NOTE
r-release-windows-ix86+x86_64 1.2.1 13.00 420.00 433.00 NOTE
r-release-osx-x86_64 1.2.1 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 18.00 427.00 445.00 NOTE
r-oldrel-osx-x86_64 1.2.1 NOTE

Check Details

Version: 1.2.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    initialize,D2C: warning in sort(IM, decr = TRUE, ind = TRUE): partial
     argument match of 'decr' to 'decreasing'
    updateD2C,D2C: warning in sort(IM, decr = TRUE, ind = TRUE): partial
     argument match of 'decr' to 'decreasing'
    D2C.2: no visible global function definition for 'quantile'
    D2C.2: no visible global function definition for 'sd'
    D2C.2: no visible global function definition for 'median'
    D2C.2: no visible global function definition for 'cor'
    D2C.2: no visible global function definition for 'acf'
    D2C.2: no visible global function definition for 'pacf'
    D2C.n: no visible global function definition for 'quantile'
    H_Rn: no visible global function definition for 'runif'
    H_sigmoid: no visible global function definition for 'runif'
    Icond: no visible global function definition for 'cor'
    PRESS: no visible global function definition for 'resid'
    PRESS: no visible global function definition for 'lm.influence'
    assoc: no visible global function definition for 'cor'
    assoc: no visible global function definition for 'cor.test'
    corDC: no visible global function definition for 'cor'
    corXY: no visible global function definition for 'cor'
    demo: no visible global function definition for 'rnorm'
    mimr: no visible global function definition for 'var'
    mimr: no visible binding for global variable 'var'
    mimr: no visible global function definition for 'cor'
    npred: no visible binding for global variable 'sd'
    npred: no visible global function definition for 'var'
    pcor1: no visible global function definition for 'cor'
    ppears: no visible global function definition for 'pnorm'
    quantization: no visible global function definition for 'median'
    quantization: no visible global function definition for 'quantile'
    rankrho: no visible global function definition for 'var'
    regrlin: no visible global function definition for 'sd'
    regrlin.d: no visible global function definition for 'sd'
    varpred: no visible binding for global variable 'sd'
    compute,DAG.network: no visible global function definition for
     'numNodes'
    compute,DAG.network: no visible global function definition for
     'inEdges'
    initialize,D2C: no visible binding for global variable 'i'
    initialize,D2C: no visible global function definition for 'nodes'
    initialize,D2C: no visible global function definition for 'subGraph'
    initialize,D2C: no visible global function definition for 'inEdges'
    initialize,D2C: no visible binding for global variable 'sd'
    initialize,DAG.network : <anonymous>: no visible global function
     definition for 'rnorm'
    initialize,DAG.network: no visible global function definition for
     'runif'
    initialize,simulatedDAG: no visible binding for global variable 'i'
    initialize,simulatedDAG: no visible global function definition for
     'runif'
    initialize,simulatedDAG: no visible global function definition for
     'edges'
    predict,D2C: no visible binding for global variable 'sd'
    updateD2C,D2C: no visible binding for global variable 'i'
    updateD2C,D2C: no visible global function definition for 'nodes'
    updateD2C,D2C: no visible global function definition for 'subGraph'
    updateD2C,D2C: no visible global function definition for 'inEdges'
    Undefined global functions or variables:
     acf cor cor.test edges i inEdges lm.influence median nodes numNodes
     pacf pnorm quantile resid rnorm runif sd subGraph var
    Consider adding
     importFrom("stats", "acf", "cor", "cor.test", "lm.influence", "median",
     "pacf", "pnorm", "quantile", "resid", "rnorm", "runif",
     "sd", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in 'D2C-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: predict,D2C-method
    > ### Title: predict if there is a connection between node i and node j
    > ### Aliases: predict,D2C-method
    >
    > ### ** Examples
    >
    > require(RBGL)
    Loading required package: RBGL
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following object is masked from 'package:randomForest':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    > require(gRbase)
    Loading required package: gRbase
    > require(foreach)
    Loading required package: foreach
    > data(example)
    > ## load the D2C object
    > testDAG<-new("simulatedDAG",NDAG=1, N=50,noNodes=5,
    + functionType = "linear", seed=1,sdn=c(0.25,0.5))
    simulatedDAG: DAG number: 1 generated: #nodes= 5 # edges= 0 # samples= 50
    > ## creates a simulatedDAG object for testing
    > plot(testDAG@list.DAGs[[1]])
    Error in testDAG@list.DAGs[[1]] : subscript out of bounds
    Calls: plot
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘D2C-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: predict,D2C-method
    > ### Title: predict if there is a connection between node i and node j
    > ### Aliases: predict,D2C-method
    >
    > ### ** Examples
    >
    > require(RBGL)
    Loading required package: RBGL
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: ‘BiocGenerics’
    
    The following objects are masked from ‘package:parallel’:
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following object is masked from ‘package:randomForest’:
    
     combine
    
    The following objects are masked from ‘package:stats’:
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from ‘package:base’:
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    > require(gRbase)
    Loading required package: gRbase
    > require(foreach)
    Loading required package: foreach
    > data(example)
    > ## load the D2C object
    > testDAG<-new("simulatedDAG",NDAG=1, N=50,noNodes=5,
    + functionType = "linear", seed=1,sdn=c(0.25,0.5))
    simulatedDAG: DAG number: 1 generated: #nodes= 5 # edges= 0 # samples= 50
    > ## creates a simulatedDAG object for testing
    > plot(testDAG@list.DAGs[[1]])
    Error in testDAG@list.DAGs[[1]] : subscript out of bounds
    Calls: plot
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in 'D2C-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: predict,D2C-method
    > ### Title: predict if there is a connection between node i and node j
    > ### Aliases: predict,D2C-method
    >
    > ### ** Examples
    >
    > require(RBGL)
    Loading required package: RBGL
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following object is masked from 'package:randomForest':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
     pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
     rownames, sapply, setdiff, sort, table, tapply, union, unique,
     unsplit, which, which.max, which.min
    
    > require(gRbase)
    Loading required package: gRbase
    > require(foreach)
    Loading required package: foreach
    > data(example)
    > ## load the D2C object
    > testDAG<-new("simulatedDAG",NDAG=1, N=50,noNodes=5,
    + functionType = "linear", seed=1,sdn=c(0.25,0.5))
    simulatedDAG: DAG number: 1 generated: #nodes= 5 # edges= 0 # samples= 50
    > ## creates a simulatedDAG object for testing
    > plot(testDAG@list.DAGs[[1]])
    Error in testDAG@list.DAGs[[1]] : subscript out of bounds
    Calls: plot
    Execution halted
Flavor: r-devel-windows-ix86+x86_64