CRAN Package Check Results for Package seedy

Last updated on 2019-04-22 07:47:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 4.43 45.94 50.37 ERROR
r-devel-linux-x86_64-debian-gcc 1.3 3.49 34.15 37.64 ERROR
r-devel-linux-x86_64-fedora-clang 1.3 58.40 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3 53.74 ERROR
r-devel-windows-ix86+x86_64 1.3 9.00 48.00 57.00 ERROR
r-patched-linux-x86_64 1.3 4.83 44.61 49.44 ERROR
r-patched-solaris-x86 1.3 79.20 ERROR
r-release-linux-x86_64 1.3 3.12 45.81 48.93 OK
r-release-windows-ix86+x86_64 1.3 5.00 55.00 60.00 OK
r-release-osx-x86_64 1.3 OK
r-oldrel-windows-ix86+x86_64 1.3 3.00 92.00 95.00 OK
r-oldrel-osx-x86_64 1.3 OK

Check Details

Version: 1.3
Check: examples
Result: ERROR
    Running examples in 'seedy-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: simulateoutbreak
    > ### Title: Simulate transmission and evolutionary dynamics
    > ### Aliases: simulateoutbreak
    >
    > ### ** Examples
    >
    >
    > W <- simulateoutbreak(init.sus=10, inf.rate=0.002, rem.rate=0.001, mut.rate=0.0001,
    + equi.pop=2000, inoc.size=1, samples.per.time=10,
    + samp.schedule="calendar", samp.freq=500, mincases=3)
    
    Simulating outbreak:
    N=2000, b=1, beta=0.002, gamma=0.001, mu=1e-04
    
    Attempt 1
    t=500, S=10, I=1, total genotypes=3, next rec time=747
    t=1000, S=8, I=1, total genotypes=6, next rec time=1035
    t=1035, S=8, I=0, total genotypes=0
    Insufficient number of infections! (mincases=3)
    Attempt 2
    t=500, S=10, I=1, total genotypes=3, next rec time=833
    t=1000, S=9, I=1, total genotypes=2, next rec time=5629
    Error in strain.log[[newinfect]] <- unique(inoc.samp) :
     attempt to select more than one element in integerOneIndex
    Calls: simulateoutbreak
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.3
Check: examples
Result: ERROR
    Running examples in ‘seedy-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: simulateoutbreak
    > ### Title: Simulate transmission and evolutionary dynamics
    > ### Aliases: simulateoutbreak
    >
    > ### ** Examples
    >
    >
    > W <- simulateoutbreak(init.sus=10, inf.rate=0.002, rem.rate=0.001, mut.rate=0.0001,
    + equi.pop=2000, inoc.size=1, samples.per.time=10,
    + samp.schedule="calendar", samp.freq=500, mincases=3)
    
    Simulating outbreak:
    N=2000, b=1, beta=0.002, gamma=0.001, mu=1e-04
    
    Attempt 1
    t=500, S=10, I=1, total genotypes=3, next rec time=747
    t=1000, S=8, I=1, total genotypes=6, next rec time=1035
    t=1035, S=8, I=0, total genotypes=0
    Insufficient number of infections! (mincases=3)
    Attempt 2
    t=500, S=10, I=1, total genotypes=3, next rec time=833
    t=1000, S=9, I=1, total genotypes=2, next rec time=5629
    Error in strain.log[[newinfect]] <- unique(inoc.samp) :
     attempt to select more than one element in integerOneIndex
    Calls: simulateoutbreak
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86