CRAN Package Check Results for Package biofiles

Last updated on 2019-10-21 13:47:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 56.61 127.15 183.76 WARN
r-devel-linux-x86_64-debian-gcc 1.0.0 45.84 99.76 145.60 WARN
r-devel-linux-x86_64-fedora-clang 1.0.0 222.05 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.0 231.21 WARN
r-devel-windows-ix86+x86_64 1.0.0 104.00 202.00 306.00 OK
r-patched-linux-x86_64 1.0.0 48.77 120.60 169.37 WARN
r-patched-solaris-x86 1.0.0 278.60 WARN
r-release-linux-x86_64 1.0.0 49.53 123.32 172.85 WARN
r-release-windows-ix86+x86_64 1.0.0 142.00 269.00 411.00 OK
r-release-osx-x86_64 1.0.0 ERROR
r-oldrel-windows-ix86+x86_64 1.0.0 94.00 185.00 279.00 OK
r-oldrel-osx-x86_64 1.0.0 ERROR

Check Details

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'IntroBiofiles.Rnw' using knitr
    Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'IntroBiofiles.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \Hy@scantitle has an extra }.
    <inserted text>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! Paragraph ended before \Hy@scantitle was complete.
    <to be read again>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Illegal parameter number in definition of \@.
    <to be read again>
     1
    l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
     }\@oldtitle{#1}}
    ! Use of \@ doesn't match its definition.
    l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
     ldtitle{#1}}
    If you say, e.g., `\def\a1{...}', then you must always
    put `1' after `\a', since control sequence names are
    ! You can't use `macro parameter character #' in horizontal mode.
    l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
     1}}
    Sorry, but I'm not programmed to handle this case;
    I'll just pretend that you didn't ask for it.
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \etb@resrvda has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \etb@resrvda was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Undefined control sequence.
    \\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
     \undef \etb@resrvda \@firs...
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@firstoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@firstoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@secondoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@secondoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to
    --- failed re-building 'IntroBiofiles.Rnw'
    
    SUMMARY: processing the following file failed:
     'IntroBiofiles.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-solaris-x86

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘IntroBiofiles.Rnw’ using knitr
    Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
    Running ‘texi2dvi’ on ‘IntroBiofiles.tex’ failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \Hy@scantitle has an extra }.
    <inserted text>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! Paragraph ended before \Hy@scantitle was complete.
    <to be read again>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Illegal parameter number in definition of \@.
    <to be read again>
     1
    l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
     }\@oldtitle{#1}}
    ! Use of \@ doesn't match its definition.
    l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
     ldtitle{#1}}
    If you say, e.g., `\def\a1{...}', then you must always
    put `1' after `\a', since control sequence names are
    ! You can't use `macro parameter character #' in horizontal mode.
    l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
     1}}
    Sorry, but I'm not programmed to handle this case;
    I'll just pretend that you didn't ask for it.
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \etb@resrvda has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \etb@resrvda was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Undefined control sequence.
    \\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
     \undef \etb@resrvda \@firs...
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@firstoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@firstoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@secondoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@secondoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as ze
    --- failed re-building ‘IntroBiofiles.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘IntroBiofiles.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘IntroBiofiles.Rnw’ using knitr
    Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'IntroBiofiles.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \Hy@scantitle has an extra }.
    <inserted text>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! Paragraph ended before \Hy@scantitle was complete.
    <to be read again>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Illegal parameter number in definition of \@.
    <to be read again>
     1
    l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
     }\@oldtitle{#1}}
    ! Use of \@ doesn't match its definition.
    l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
     ldtitle{#1}}
    If you say, e.g., `\def\a1{...}', then you must always
    put `1' after `\a', since control sequence names are
    ! You can't use `macro parameter character #' in horizontal mode.
    l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
     1}}
    Sorry, but I'm not programmed to handle this case;
    I'll just pretend that you didn't ask for it.
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \etb@resrvda has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \etb@resrvda was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Undefined control sequence.
    \\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
     \undef \etb@resrvda \@firs...
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@firstoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@firstoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@secondoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@secondoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.75 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.87 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to
    --- failed re-building ‘IntroBiofiles.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘IntroBiofiles.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘biofiles-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: end
    > ### Title: Get or set the end position of genomic features
    > ### Aliases: end end<- end,gbLocation-method end<-,gbLocation-method
    > ### end,gbFeature-method end<-,gbFeature-method end,gbFeatureTable-method
    > ### end<-,gbFeatureTable-method end,gbRecord-method
    > ### end,gbRecordList-method
    >
    > ### ** Examples
    >
    > load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))
    >
    > ## end
    > end(x)
     [1] 1658 452 452 757 757 734 734 812 1658 1658
    > cds <- x["CDS"]
    > end(cds)
    [1] 452 757 734 1658
    >
    > ## `end<-`
    > end(cds) <- 1000
    > end(cds)
    [1] 1000 1000 1000 1000
    > ranges(cds)
    Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
     there is no package called ‘GenomeInfoDbData’
    Calls: ranges ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘test-all.R’ [6s/6s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     11: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     12: withOneRestart(expr, restarts[[1L]])
     13: doWithOneRestart(return(expr), restart)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 263 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 6 ]
     1. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#6)
     2. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#9)
     3. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#13)
     4. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#14)
     5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
     6. Error: Ranges work for gbFeatures (@test-07-gbRecord.r#51)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘IntroBiofiles.Rnw’ using knitr
    Quitting from lines 10-11 (IntroBiofiles.Rnw)
    Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
    there is no package called 'BiocStyle'
    --- failed re-building ‘IntroBiofiles.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘IntroBiofiles.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.0
Check: tests
Result: ERROR
     Running ‘test-all.R’ [9s/13s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     ── 5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
     `gbLocation("123^125")` threw an error with unexpected message.
     Expected match: "Inadmissible range"
     Actual message: "c++ exception (unknown reason)"
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 267 SKIPPED: 1 FAILED: 5
     1. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#6)
     2. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#9)
     3. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#13)
     4. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#14)
     5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 10-11 (IntroBiofiles.Rnw)
    Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
    there is no package called 'BiocStyle'
    Execution halted
Flavor: r-oldrel-osx-x86_64