Last updated on 2019-12-21 10:47:40 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.4 | 31.29 | 45.10 | 76.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.4 | 21.94 | 35.55 | 57.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.4 | 117.61 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.4 | 109.40 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2.4 | 81.00 | 136.00 | 217.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2.4 | 87.00 | 135.00 | 222.00 | OK | |
| r-patched-linux-x86_64 | 1.2.4 | OK | ||||
| r-patched-solaris-x86 | 1.2.4 | 125.60 | OK | |||
| r-release-linux-x86_64 | 1.2.4 | 25.87 | 51.20 | 77.07 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.4 | 58.00 | 130.00 | 188.00 | OK | |
| r-release-osx-x86_64 | 1.2.4 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.4 | 45.00 | 155.00 | 200.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.4 | OK |
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in 'BTR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: model_train
> ### Title: Training Model
> ### Aliases: model_train
>
> ### ** Examples
>
> data(wilson_raw_data)
> cdata = initialise_raw_data(wilson_raw_data, max_expr = 'low')
>
> #select only relevant cells.
> cell_ind = grepl('cmp', rownames(cdata)) | grepl('gmp', rownames(cdata))
> fcdata = cdata[cell_ind,]
>
> #select genes to be included.
> gene_ind = c('fli1', 'gata1', 'gata2', 'gfi1', 'scl', 'sfpi1')
> fcdata = fcdata[, gene_ind]
>
> final_model = model_train(cdata=fcdata, max_varperrule=2)
Warning: executing %dopar% sequentially: no parallel backend registered
Error in { :
task 1 failed - "class(x) == "data.frame" | class(x) == "matrix" are not all TRUE"
Calls: model_train -> %dopar% -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2.4
Check: compiled code
Result: NOTE
File ‘BTR/libs/BTR.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc