Last updated on 2020-01-15 08:52:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 8.19 | 38.20 | 46.39 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 5.05 | 28.51 | 33.56 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 54.62 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 54.25 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0.1 | 20.00 | 84.00 | 104.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0.1 | 12.00 | 71.00 | 83.00 | WARN | |
| r-patched-linux-x86_64 | 1.0.1 | 6.12 | 34.07 | 40.19 | WARN | |
| r-patched-solaris-x86 | 1.0.1 | 78.70 | NOTE | |||
| r-release-linux-x86_64 | 1.0.1 | 6.18 | 34.70 | 40.88 | WARN | |
| r-release-windows-ix86+x86_64 | 1.0.1 | 11.00 | 86.00 | 97.00 | NOTE | |
| r-release-osx-x86_64 | 1.0.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.1 | 10.00 | 60.00 | 70.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.0.1 | NOTE |
Version: 1.0.1
Check: dependencies in R code
Result: NOTE
Unexported object imported by a ':::' call: 'boa:::boa.getparms'
See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.0.1
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
'plotACF' 'plotDensity' 'plotRmean' 'plotTrace'
Found the platform-specific device:
'x11'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
bayhapReg: no visible global function definition for 'terms'
bayhapReg: no visible global function definition for 'model.response'
bayhapReg: no visible global function definition for 'model.frame'
bayhapReg: no visible global function definition for 'var'
boa.plot.acf.ad: no visible global function definition for 'acf'
boa.plot.acf.ad: no visible global function definition for 'plot'
boa.plot.acf.ad: no visible global function definition for 'abline'
boa.plot.acf.ad: no visible global function definition for 'par'
boa.plot.acf.ad: no visible global function definition for 'legend'
correl: no visible global function definition for 'cor'
genotype: no visible global function definition for 'na.omit'
haplo.prior: no visible global function definition for 'qnorm'
import: no visible global function definition for 'read.table'
plotACF: no visible global function definition for 'x11'
plotACF: no visible global function definition for 'par'
plotDensity: no visible global function definition for 'x11'
plotDensity: no visible global function definition for 'par'
plotRmean: no visible global function definition for 'x11'
plotRmean: no visible global function definition for 'par'
plotTrace: no visible global function definition for 'x11'
plotTrace: no visible global function definition for 'par'
print.freq: no visible binding for global variable 'sd'
print.freq: no visible binding for global variable 'quantile'
print.reg: no visible global function definition for 'sd'
print.reg: no visible binding for global variable 'quantile'
print.reg: no visible global function definition for 'quantile'
Undefined global functions or variables:
abline acf cor legend model.frame model.response na.omit par plot
qnorm quantile read.table sd terms var x11
Consider adding
importFrom("grDevices", "x11")
importFrom("graphics", "abline", "legend", "par", "plot")
importFrom("stats", "acf", "cor", "model.frame", "model.response",
"na.omit", "qnorm", "quantile", "sd", "terms", "var")
importFrom("utils", "read.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.0.1
Check: Rd line widths
Result: NOTE
Rd file 'BayHap-internal.Rd':
\usage lines wider than 90 characters:
expectedGenotypes(x, alleles = allele.names(x), ploidy = 2, sort = TRUE, haplotype = FALSE)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.1
Check: compiled code
Result: NOTE
File 'BayHap/libs/BayHap.so':
Found 'rand', possibly from 'rand' (C)
Object: 'mcmc.o'
Found 'srand', possibly from 'srand' (C)
Object: 'mcmc.o'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.0.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'outhaplo140120181805397YDGABKNRWJ.txt'
'outhaplo140120181808326XNBMRYFAHT.txt'
'outhaplo140120181811758LOATCFJWUY.txt'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘outhaplo140120170320911YDGABKNRWJ.txt’
‘outhaplo140120170323955XNBMRYFAHT.txt’
‘outhaplo140120170327301LOATCFJWUY.txt’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: compiled code
Result: NOTE
File ‘BayHap/libs/BayHap.so’:
Found ‘rand’, possibly from ‘rand’ (C)
Object: ‘mcmc.o’
Found ‘srand’, possibly from ‘srand’ (C)
Object: ‘mcmc.o’
File ‘BayHap/libs/BayHap.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘outhaplo040120062750269YDGABKNRWJ.txt’
‘outhaplo040120062753474XNBMRYFAHT.txt’
‘outhaplo040120062757512LOATCFJWUY.txt’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘outhaplo050120083600694YDGABKNRWJ.txt’
‘outhaplo050120083603713XNBMRYFAHT.txt’
‘outhaplo050120083608344LOATCFJWUY.txt’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: R code for possible problems
Result: NOTE
bayhapReg: no visible global function definition for 'terms'
bayhapReg: no visible global function definition for 'model.response'
bayhapReg: no visible global function definition for 'model.frame'
bayhapReg: no visible global function definition for 'var'
boa.plot.acf.ad: no visible global function definition for 'acf'
boa.plot.acf.ad: no visible global function definition for 'plot'
boa.plot.acf.ad: no visible global function definition for 'abline'
boa.plot.acf.ad: no visible global function definition for 'par'
boa.plot.acf.ad: no visible global function definition for 'legend'
correl: no visible global function definition for 'cor'
genotype: no visible global function definition for 'na.omit'
haplo.prior: no visible global function definition for 'qnorm'
import: no visible global function definition for 'read.table'
plotACF: no visible global function definition for 'x11'
plotACF: no visible global function definition for 'par'
plotDensity: no visible global function definition for 'x11'
plotDensity: no visible global function definition for 'par'
plotRmean: no visible global function definition for 'x11'
plotRmean: no visible global function definition for 'par'
plotTrace: no visible global function definition for 'x11'
plotTrace: no visible global function definition for 'par'
print.freq: no visible binding for global variable 'sd'
print.freq: no visible binding for global variable 'quantile'
print.reg: no visible global function definition for 'sd'
print.reg: no visible binding for global variable 'quantile'
print.reg: no visible global function definition for 'quantile'
Undefined global functions or variables:
abline acf cor legend model.frame model.response na.omit par plot
qnorm quantile read.table sd terms var x11
Consider adding
importFrom("grDevices", "x11")
importFrom("graphics", "abline", "legend", "par", "plot")
importFrom("stats", "acf", "cor", "model.frame", "model.response",
"na.omit", "qnorm", "quantile", "sd", "terms", "var")
importFrom("utils", "read.table")
to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.0.1
Check: compiled code
Result: NOTE
File 'BayHap/libs/i386/BayHap.dll':
Found 'rand', possibly from 'rand' (C)
Object: 'mcmc.o'
Found 'srand', possibly from 'srand' (C)
Object: 'mcmc.o'
File 'BayHap/libs/x64/BayHap.dll':
Found 'rand', possibly from 'rand' (C)
Object: 'mcmc.o'
Found 'srand', possibly from 'srand' (C)
Object: 'mcmc.o'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
mcmc.c:337:4: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
Flavors: r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.1
Check: compiled code
Result: NOTE
File ‘BayHap/libs/BayHap.so’:
Found ‘_rand’, possibly from ‘rand’ (C)
Object: ‘mcmc.o’
Found ‘_srand’, possibly from ‘srand’ (C)
Object: ‘mcmc.o’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64