CRAN Package Check Results for Package STRAH

Last updated on 2020-10-13 05:49:15 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 36.70 318.81 355.51 ERROR
r-devel-linux-x86_64-debian-gcc 1.0 30.64 239.54 270.18 ERROR
r-devel-linux-x86_64-fedora-clang 1.0 460.86 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0 427.52 ERROR
r-devel-windows-ix86+x86_64 1.0 80.00 281.00 361.00 NOTE
r-patched-linux-x86_64 1.0 27.38 290.05 317.43 ERROR
r-patched-solaris-x86 1.0 600.40 ERROR
r-release-linux-x86_64 1.0 37.55 289.96 327.51 OK
r-release-macos-x86_64 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 65.00 355.00 420.00 NOTE
r-oldrel-macos-x86_64 1.0 ERROR
r-oldrel-windows-ix86+x86_64 1.0 73.00 292.00 365.00 NOTE

Check Details

Version: 1.0
Check: examples
Result: ERROR
    Running examples in 'STRAH-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: motif_detection
    > ### Title: DNA-motif detection in a given DNAStringSet, a given
    > ### DNA-sequence in fasta-format, or a specified region of any genome
    > ### Aliases: motif_detection
    > ### Keywords: array datasets list methods univar
    >
    > ### ** Examples
    >
    > data(chr6_1580213_1582559)
    > motif_detection(seqName = chr6_1580213_1582559, start.position = NA, end.position = NA,
    + motif = "CCNCCNTNNCCNC", nr.mismatch = 1, reverse.comp = FALSE, print.status = FALSE)
    Error in as.character.default(new("BSgenome", pkgname = "BSgenome.Hsapiens.UCSC.hg19", :
     no method for coercing this S4 class to a vector
    Calls: motif_detection ... toString.default -> paste -> as.character -> as.character.default
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘BSgenome’ ‘BiocManager’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64

Version: 1.0
Check: examples
Result: ERROR
    Running examples in ‘STRAH-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: motif_detection
    > ### Title: DNA-motif detection in a given DNAStringSet, a given
    > ### DNA-sequence in fasta-format, or a specified region of any genome
    > ### Aliases: motif_detection
    > ### Keywords: array datasets list methods univar
    >
    > ### ** Examples
    >
    > data(chr6_1580213_1582559)
    > motif_detection(seqName = chr6_1580213_1582559, start.position = NA, end.position = NA,
    + motif = "CCNCCNTNNCCNC", nr.mismatch = 1, reverse.comp = FALSE, print.status = FALSE)
    Error in as.character.default(new("BSgenome", pkgname = "BSgenome.Hsapiens.UCSC.hg19", :
     no method for coercing this S4 class to a vector
    Calls: motif_detection ... toString.default -> paste -> as.character -> as.character.default
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'BSgenome.Ptroglodytes.UCSC.panTro5'
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg19’
    
    Package suggested but not available for checking: ‘BSgenome.Ptroglodytes.UCSC.panTro5’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-macos-x86_64