Last updated on 2021-02-05 15:54:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 4.80 | 67.29 | 72.09 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 3.62 | 31.82 | 35.44 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 90.41 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 82.40 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.0 | 8.00 | 85.00 | 93.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 3.99 | 62.67 | 66.66 | OK | |
| r-patched-solaris-x86 | 1.0.0 | 112.10 | OK | |||
| r-release-linux-x86_64 | 1.0.0 | 4.27 | 62.32 | 66.59 | OK | |
| r-release-macos-x86_64 | 1.0.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.0.0 | 7.00 | 84.00 | 91.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 6.00 | 65.00 | 71.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘marindicators-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: allBiodiversity
> ### Title: Calculates all Biodiversity indicators
> ### Aliases: allBiodiversity
>
> ### ** Examples
>
> data(X)
>
> # Calculate raw and standardized indicators
> allBiodiversity(X = X, metric = "ABUNDANCE", groups = "ALL", TL.table = species.info,
+ percentiles = c(.25, 0.75), minTL = 0, years = c(2014:2019), raw = TRUE, std = TRUE)
Error in xtfrm.data.frame(x) : cannot xtfrm data frames
Calls: allBiodiversity ... lapply -> FUN -> as.vector -> xtfrm -> xtfrm.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(marindicators)
>
> test_check("marindicators")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_output.R:28:1): (code run outside of `test_that()`) ─────────────
Error: cannot xtfrm data frames
Backtrace:
█
1. └─marindicators::extractAll(...) test_output.R:28:0
2. └─marindicators::allBiodiversity(...)
3. └─marindicators::kemptonQ(...)
4. ├─X.ij[order(X.ij[metric]), metric]
5. ├─base::`[.data.frame`(X.ij, order(X.ij[metric]), metric)
6. └─base::order(X.ij[metric])
7. └─base::lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
8. └─base:::FUN(X[[i]], ...)
9. ├─base::as.vector(xtfrm(x))
10. ├─base::xtfrm(x)
11. └─base::xtfrm.data.frame(x)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘marindicators-vignette.Rmd’ using rmarkdown
Quitting from lines 336-341 (marindicators-vignette.Rmd)
Error: processing vignette ‘marindicators-vignette.Rmd’ failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘marindicators-vignette.Rmd’
SUMMARY: processing the following file failed:
‘marindicators-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc