Last updated on 2021-11-08 06:48:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0-2 | 23.23 | 207.62 | 230.85 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 2.0-2 | 20.18 | 200.81 | 220.99 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0-2 | 292.42 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0-2 | 360.42 | NOTE | |||
| r-devel-windows-x86_64 | 2.0-2 | 27.00 | 235.00 | 262.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 2.0-2 | NOTE | ||||
| r-patched-linux-x86_64 | 2.0-2 | 21.97 | 257.91 | 279.88 | OK | |
| r-patched-solaris-x86 | 2.0-2 | 364.50 | NOTE | |||
| r-release-linux-x86_64 | 2.0-2 | 23.15 | 259.15 | 282.30 | OK | |
| r-release-macos-arm64 | 2.0-2 | NOTE | ||||
| r-release-macos-x86_64 | 2.0-2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 2.0-2 | 33.00 | 239.00 | 272.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0-2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 2.0-2 | 29.00 | 285.00 | 314.00 | OK |
Version: 2.0-2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'SNPassoc.Rmd' using rmarkdown
Registered S3 method overwritten by 'SNPassoc':
method from
summary.haplo.glm haplo.stats
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(object[, colSNPs, drop = FALSE], expandsetupSNP) :
scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 101-102 (SNPassoc.Rmd)
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
attempt to set an attribute on NULL
--- failed re-building 'SNPassoc.Rmd'
SUMMARY: processing the following file failed:
'SNPassoc.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0-2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘BiocStyle’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 2.0-2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘SNPassoc.Rmd’ using rmarkdown
Registered S3 method overwritten by 'SNPassoc':
method from
summary.haplo.glm haplo.stats
OMP: Warning #96: Cannot form a team with 15 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(object[, colSNPs, drop = FALSE], expandsetupSNP) :
scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 101-102 (SNPassoc.Rmd)
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
attempt to set an attribute on NULL
--- failed re-building ‘SNPassoc.Rmd’
SUMMARY: processing the following file failed:
‘SNPassoc.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang