CRAN Package Check Results for Package RGBM

Last updated on 2022-04-27 11:54:07 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-8 8.90 45.00 53.90 OK
r-devel-linux-x86_64-debian-gcc 1.0-8 6.08 34.46 40.54 OK
r-devel-linux-x86_64-fedora-clang 1.0-8 68.30 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0-8 60.85 ERROR
r-devel-windows-x86_64 1.0-8 27.00 75.00 102.00 OK
r-patched-linux-x86_64 1.0-8 7.18 43.76 50.94 OK
r-release-linux-x86_64 1.0-8 7.57 42.88 50.45 OK
r-release-macos-arm64 1.0-8 24.00 OK
r-release-macos-x86_64 1.0-8 48.00 OK
r-release-windows-x86_64 1.0-8 34.00 78.00 112.00 OK
r-oldrel-macos-arm64 1.0-8 28.00 OK
r-oldrel-macos-x86_64 1.0-8 41.00 OK
r-oldrel-windows-ix86+x86_64 1.0-8 22.00 82.00 104.00 OK

Check Details

Version: 1.0-8
Check: examples
Result: ERROR
    Running examples in ‘RGBM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RGBM
    > ### Title: Regularized Gradient Boosting Machine for inferring GRN
    > ### Aliases: RGBM
    >
    > ### ** Examples
    >
    > # load RGBM library
    > library("RGBM")
    > # this step is optional, it helps speed up calculations, run in parallel on 2 processors
    > library(doParallel)
    > cl <- makeCluster(2)
    > # run network inference on a 100-by-100 dummy expression data.
    > A = RGBM()
    [1] "Identified colids for active tfs"
    [1] "Identified list of active tfs for each gene"
    [1] "Performed first step of model building"
    [1] "Intermediate GRN and Variable Importance Curve in: /tmp/RtmpKadwE6/working_dir/RtmpS40GNt"
    Error in { : task 1 failed - "'length = 5' in coercion to 'logical(1)'"
    Calls: RGBM ... regularized_GBM_step -> select_ideal_k -> %dopar% -> <Anonymous>
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0-8
Check: examples
Result: ERROR
    Running examples in ‘RGBM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RGBM
    > ### Title: Regularized Gradient Boosting Machine for inferring GRN
    > ### Aliases: RGBM
    >
    > ### ** Examples
    >
    > # load RGBM library
    > library("RGBM")
    > # this step is optional, it helps speed up calculations, run in parallel on 2 processors
    > library(doParallel)
    > cl <- makeCluster(2)
    > # run network inference on a 100-by-100 dummy expression data.
    > A = RGBM()
    [1] "Identified colids for active tfs"
    [1] "Identified list of active tfs for each gene"
    [1] "Performed first step of model building"
    [1] "Intermediate GRN and Variable Importance Curve in: /tmp/RtmpgTkViN/working_dir/RtmpG4ov0Z"
    Error in { : task 1 failed - "'length = 5' in coercion to 'logical(1)'"
    Calls: RGBM ... regularized_GBM_step -> select_ideal_k -> %dopar% -> <Anonymous>
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc