CRAN Package Check Results for Package mlr3proba

Last updated on 2022-05-16 07:49:06 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.9 46.08 299.02 345.10 ERROR
r-devel-linux-x86_64-debian-gcc 0.4.9 40.78 213.49 254.27 ERROR
r-devel-linux-x86_64-fedora-clang 0.4.9 411.36 ERROR
r-devel-linux-x86_64-fedora-gcc 0.4.9 421.74 ERROR
r-devel-windows-x86_64 0.4.9 148.00 318.00 466.00 ERROR
r-patched-linux-x86_64 0.4.9 48.13 279.72 327.85 OK
r-release-linux-x86_64 0.4.9 36.22 275.60 311.82 OK
r-release-macos-arm64 0.4.9 110.00 OK
r-release-macos-x86_64 0.4.9 130.00 OK
r-release-windows-x86_64 0.4.9 164.00 330.00 494.00 OK
r-oldrel-macos-arm64 0.4.9 92.00 OK
r-oldrel-macos-x86_64 0.4.9 140.00 OK
r-oldrel-windows-ix86+x86_64 0.4.9 99.00 463.00 562.00 OK

Check Details

Version: 0.4.9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'survAUC'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.4.9
Check: tests
Result: ERROR
     Running 'testthat.R' [94s/114s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > if (requireNamespace("testthat", quietly = TRUE)) {
     + library("testthat")
     + library("checkmate") # for more expect_*() functions
     + library("mlr3proba")
     + test_check("mlr3proba")
     + }
     Loading required package: mlr3
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
    
     == Skipped tests ===============================================================
     * On CRAN (2)
     * survAUC cannot be loaded (1)
    
     == Failed tests ================================================================
     -- Error (test_pipelines.R:46:3): survbagging ----------------------------------
     Error in `nc == 1 && length(cnms) == nc`: 'length = 2' in coercion to 'logical(1)'
     This happened PipeOp survavg's $predict()
     Backtrace:
     x
     1. +-pipe$predict(task) at test_pipelines.R:46:2
     2. | \-mlr3:::.__Learner__predict(...)
     3. | \-mlr3:::learner_predict(self, task, row_ids)
     4. | \-mlr3misc::encapsulate(...)
     5. | +-mlr3misc::invoke(...)
     6. | | \-base::eval.parent(expr, n = 1L)
     7. | | \-base::eval(expr, p)
     8. | | \-base::eval(expr, p)
     9. | \-mlr3 .f(task = `<TaskSurv>`, learner = `<GrphLrnr>`)
     10. | \-get_private(learner)$.predict(task)
     11. | \-mlr3pipelines:::.__GraphLearner__.predict(...)
     12. | \-self$graph$predict(task)
     13. | \-mlr3pipelines:::.__Graph__predict(...)
     14. | \-mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
     15. | \-op[[fun]](input)
     16. | \-mlr3pipelines:::.__PipeOp__predict(...)
     17. | +-base::withCallingHandlers(...)
     18. | \-private$.predict(input)
     19. | \-mlr3pipelines:::.__PipeOpEnsemble__.predict(...)
     20. | \-private$weighted_avg_predictions(inputs, weights, row_ids, truth)
     21. | \-mlr3proba:::.__PipeOpSurvAvg__weighted_avg_predictions(...)
     22. | \-distr6::mixMatrix(distr)
     23. | \-distr6:::.merge_matpdf_cols(lapply(mds, gprm, "pdf"))
     24. \-base::.handleSimpleError(...)
     25. \-mlr3pipelines h(simpleError(msg, call))
    
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.9
Check: tests
Result: ERROR
     Running ‘testthat.R’ [64s/111s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if (requireNamespace("testthat", quietly = TRUE)) {
     + library("testthat")
     + library("checkmate") # for more expect_*() functions
     + library("mlr3proba")
     + test_check("mlr3proba")
     + }
     Loading required package: mlr3
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)
     • survAUC cannot be loaded (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_pipelines.R:46:3): survbagging ──────────────────────────────────
     Error in `nc == 1 && length(cnms) == nc`: 'length = 2' in coercion to 'logical(1)'
     This happened PipeOp survavg's $predict()
     Backtrace:
     ▆
     1. ├─pipe$predict(task) at test_pipelines.R:46:2
     2. │ └─mlr3:::.__Learner__predict(...)
     3. │ └─mlr3:::learner_predict(self, task, row_ids)
     4. │ └─mlr3misc::encapsulate(...)
     5. │ ├─mlr3misc::invoke(...)
     6. │ │ └─base::eval.parent(expr, n = 1L)
     7. │ │ └─base::eval(expr, p)
     8. │ │ └─base::eval(expr, p)
     9. │ └─mlr3 .f(task = `<TaskSurv>`, learner = `<GrphLrnr>`)
     10. │ └─get_private(learner)$.predict(task)
     11. │ └─mlr3pipelines:::.__GraphLearner__.predict(...)
     12. │ └─self$graph$predict(task)
     13. │ └─mlr3pipelines:::.__Graph__predict(...)
     14. │ └─mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
     15. │ └─op[[fun]](input)
     16. │ └─mlr3pipelines:::.__PipeOp__predict(...)
     17. │ ├─base::withCallingHandlers(...)
     18. │ └─private$.predict(input)
     19. │ └─mlr3pipelines:::.__PipeOpEnsemble__.predict(...)
     20. │ └─private$weighted_avg_predictions(inputs, weights, row_ids, truth)
     21. │ └─mlr3proba:::.__PipeOpSurvAvg__weighted_avg_predictions(...)
     22. │ └─distr6::mixMatrix(distr)
     23. │ └─distr6:::.merge_matpdf_cols(lapply(mds, gprm, "pdf"))
     24. └─base::.handleSimpleError(...)
     25. └─mlr3pipelines h(simpleError(msg, call))
    
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.9
Check: tests
Result: ERROR
     Running ‘testthat.R’ [105s/136s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if (requireNamespace("testthat", quietly = TRUE)) {
     + library("testthat")
     + library("checkmate") # for more expect_*() functions
     + library("mlr3proba")
     + test_check("mlr3proba")
     + }
     Loading required package: mlr3
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)
     • survAUC cannot be loaded (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_pipelines.R:46:3): survbagging ──────────────────────────────────
     Error in `nc == 1 && length(cnms) == nc`: 'length = 2' in coercion to 'logical(1)'
     This happened PipeOp survavg's $predict()
     Backtrace:
     ▆
     1. ├─pipe$predict(task) at test_pipelines.R:46:2
     2. │ └─mlr3:::.__Learner__predict(...)
     3. │ └─mlr3:::learner_predict(self, task, row_ids)
     4. │ └─mlr3misc::encapsulate(...)
     5. │ ├─mlr3misc::invoke(...)
     6. │ │ └─base::eval.parent(expr, n = 1L)
     7. │ │ └─base::eval(expr, p)
     8. │ │ └─base::eval(expr, p)
     9. │ └─mlr3 .f(task = `<TaskSurv>`, learner = `<GrphLrnr>`)
     10. │ └─get_private(learner)$.predict(task)
     11. │ └─mlr3pipelines:::.__GraphLearner__.predict(...)
     12. │ └─self$graph$predict(task)
     13. │ └─mlr3pipelines:::.__Graph__predict(...)
     14. │ └─mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
     15. │ └─op[[fun]](input)
     16. │ └─mlr3pipelines:::.__PipeOp__predict(...)
     17. │ ├─base::withCallingHandlers(...)
     18. │ └─private$.predict(input)
     19. │ └─mlr3pipelines:::.__PipeOpEnsemble__.predict(...)
     20. │ └─private$weighted_avg_predictions(inputs, weights, row_ids, truth)
     21. │ └─mlr3proba:::.__PipeOpSurvAvg__weighted_avg_predictions(...)
     22. │ └─distr6::mixMatrix(distr)
     23. │ └─distr6:::.merge_matpdf_cols(lapply(mds, gprm, "pdf"))
     24. └─base::.handleSimpleError(...)
     25. └─mlr3pipelines h(simpleError(msg, call))
    
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.9
Check: tests
Result: ERROR
     Running ‘testthat.R’ [110s/203s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if (requireNamespace("testthat", quietly = TRUE)) {
     + library("testthat")
     + library("checkmate") # for more expect_*() functions
     + library("mlr3proba")
     + test_check("mlr3proba")
     + }
     Loading required package: mlr3
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)
     • survAUC cannot be loaded (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_pipelines.R:46:3): survbagging ──────────────────────────────────
     Error in `nc == 1 && length(cnms) == nc`: 'length = 2' in coercion to 'logical(1)'
     This happened PipeOp survavg's $predict()
     Backtrace:
     ▆
     1. ├─pipe$predict(task) at test_pipelines.R:46:2
     2. │ └─mlr3:::.__Learner__predict(...)
     3. │ └─mlr3:::learner_predict(self, task, row_ids)
     4. │ └─mlr3misc::encapsulate(...)
     5. │ ├─mlr3misc::invoke(...)
     6. │ │ └─base::eval.parent(expr, n = 1L)
     7. │ │ └─base::eval(expr, p)
     8. │ │ └─base::eval(expr, p)
     9. │ └─mlr3 .f(task = `<TaskSurv>`, learner = `<GrphLrnr>`)
     10. │ └─get_private(learner)$.predict(task)
     11. │ └─mlr3pipelines:::.__GraphLearner__.predict(...)
     12. │ └─self$graph$predict(task)
     13. │ └─mlr3pipelines:::.__Graph__predict(...)
     14. │ └─mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
     15. │ └─op[[fun]](input)
     16. │ └─mlr3pipelines:::.__PipeOp__predict(...)
     17. │ ├─base::withCallingHandlers(...)
     18. │ └─private$.predict(input)
     19. │ └─mlr3pipelines:::.__PipeOpEnsemble__.predict(...)
     20. │ └─private$weighted_avg_predictions(inputs, weights, row_ids, truth)
     21. │ └─mlr3proba:::.__PipeOpSurvAvg__weighted_avg_predictions(...)
     22. │ └─distr6::mixMatrix(distr)
     23. │ └─distr6:::.merge_matpdf_cols(lapply(mds, gprm, "pdf"))
     24. └─base::.handleSimpleError(...)
     25. └─mlr3pipelines h(simpleError(msg, call))
    
     [ FAIL 1 | WARN 0 | SKIP 3 | PASS 1449 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.4.9
Check: tests
Result: ERROR
     Running 'testthat.R' [89s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > if (requireNamespace("testthat", quietly = TRUE)) {
     + library("testthat")
     + library("checkmate") # for more expect_*() functions
     + library("mlr3proba")
     + test_check("mlr3proba")
     + }
     Loading required package: mlr3
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 1818 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_pipelines.R:46:3): survbagging ──────────────────────────────────
     Error in `nc == 1 && length(cnms) == nc`: 'length = 2' in coercion to 'logical(1)'
     This happened PipeOp survavg's $predict()
     Backtrace:
     ▆
     1. ├─pipe$predict(task) at test_pipelines.R:46:2
     2. │ └─mlr3:::.__Learner__predict(...)
     3. │ └─mlr3:::learner_predict(self, task, row_ids)
     4. │ └─mlr3misc::encapsulate(...)
     5. │ ├─mlr3misc::invoke(...)
     6. │ │ └─base::eval.parent(expr, n = 1L)
     7. │ │ └─base::eval(expr, p)
     8. │ │ └─base::eval(expr, p)
     9. │ └─mlr3 .f(task = `<TaskSurv>`, learner = `<GrphLrnr>`)
     10. │ └─get_private(learner)$.predict(task)
     11. │ └─mlr3pipelines:::.__GraphLearner__.predict(...)
     12. │ └─self$graph$predict(task)
     13. │ └─mlr3pipelines:::.__Graph__predict(...)
     14. │ └─mlr3pipelines:::graph_reduce(self, input, "predict", single_input)
     15. │ └─op[[fun]](input)
     16. │ └─mlr3pipelines:::.__PipeOp__predict(...)
     17. │ ├─base::withCallingHandlers(...)
     18. │ └─private$.predict(input)
     19. │ └─mlr3pipelines:::.__PipeOpEnsemble__.predict(...)
     20. │ └─private$weighted_avg_predictions(inputs, weights, row_ids, truth)
     21. │ └─mlr3proba:::.__PipeOpSurvAvg__weighted_avg_predictions(...)
     22. │ └─distr6::mixMatrix(distr)
     23. │ └─distr6:::.merge_matpdf_cols(lapply(mds, gprm, "pdf"))
     24. └─base::.handleSimpleError(...)
     25. └─mlr3pipelines h(simpleError(msg, call))
    
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 1818 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64