CRAN Package Check Results for Package voluModel

Last updated on 2022-05-21 05:52:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.3 34.46 654.19 688.65 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.3 30.51 470.76 501.27 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.3 772.32 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.3 758.45 ERROR
r-devel-windows-x86_64 0.1.3 52.00 762.00 814.00 ERROR
r-patched-linux-x86_64 0.1.3 30.21 603.13 633.34 OK
r-release-linux-x86_64 0.1.3 27.44 615.42 642.86 OK
r-release-macos-arm64 0.1.3 381.00 ERROR
r-release-macos-x86_64 0.1.3 326.00 OK
r-release-windows-x86_64 0.1.3 64.00 778.00 842.00 OK
r-oldrel-macos-arm64 0.1.3 192.00 OK
r-oldrel-macos-x86_64 0.1.3 276.00 OK
r-oldrel-windows-ix86+x86_64 0.1.3 82.00 794.00 876.00 OK

Check Details

Version: 0.1.3
Check: examples
Result: ERROR
    Running examples in 'voluModel-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: smoothRaster
    > ### Title: Smooth rasters
    > ### Aliases: smoothRaster
    > ### Keywords: dataPrep
    >
    > ### ** Examples
    >
    > library(raster)
    Loading required package: sp
    > library(fields)
    Loading required package: spam
    Spam version 2.8-0 (2022-01-05) is loaded.
    Type 'help( Spam)' or 'demo( spam)' for a short introduction
    and overview of this package.
    Help for individual functions is also obtained by adding the
    suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
    
    Attaching package: 'spam'
    
    The following objects are masked from 'package:base':
    
     backsolve, forwardsolve
    
    Loading required package: viridis
    Loading required package: viridisLite
    
    Try help(fields) to get started.
    > # Create sample raster
    > r <- raster(ncol=100, nrow=100)
    > values(r) <- 1:10000
    >
    > # Introduce a "bubble"
    > values(r)[520:525] <- 9999
    > plot(r)
    >
    > # Smooth bubble with smoothRaster
    > smoothedRaster <- smoothRaster(r)
    Warning:
    Grid searches over lambda (nugget and sill variances) with minima at the endpoints:
     (GCV) Generalized Cross-Validation
     minimum at right endpoint lambda = 3.025469e-06 (eff. df= 593.75 )
    > plot(smoothedRaster)
    >
    > fastSmooth <- smoothRaster(r, fast = TRUE, aRange = 3.0)
    Error in h(simpleError(msg, call)) :
     error in evaluating the argument 'x' in selecting a method for function 'diag': Lapack routine dgesv: system is exactly singular: U[1,1] = 0
    Calls: smoothRaster ... solve -> solve -> solve.default -> .handleSimpleError -> h
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: examples
Result: ERROR
    Running examples in ‘voluModel-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: smoothRaster
    > ### Title: Smooth rasters
    > ### Aliases: smoothRaster
    > ### Keywords: dataPrep
    >
    > ### ** Examples
    >
    > library(raster)
    Loading required package: sp
    > library(fields)
    Loading required package: spam
    Spam version 2.8-0 (2022-01-05) is loaded.
    Type 'help( Spam)' or 'demo( spam)' for a short introduction
    and overview of this package.
    Help for individual functions is also obtained by adding the
    suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
    
    Attaching package: ‘spam’
    
    The following objects are masked from ‘package:base’:
    
     backsolve, forwardsolve
    
    Loading required package: viridis
    Loading required package: viridisLite
    
    Try help(fields) to get started.
    > # Create sample raster
    > r <- raster(ncol=100, nrow=100)
    > values(r) <- 1:10000
    >
    > # Introduce a "bubble"
    > values(r)[520:525] <- 9999
    > plot(r)
    >
    > # Smooth bubble with smoothRaster
    > smoothedRaster <- smoothRaster(r)
    Warning:
    Grid searches over lambda (nugget and sill variances) with minima at the endpoints:
     (GCV) Generalized Cross-Validation
     minimum at right endpoint lambda = 3.025469e-06 (eff. df= 593.75 )
    > plot(smoothedRaster)
    >
    > fastSmooth <- smoothRaster(r, fast = TRUE, aRange = 3.0)
    Error in h(simpleError(msg, call)) :
     error in evaluating the argument 'x' in selecting a method for function 'diag': Lapack routine dgesv: system is exactly singular: U[1,1] = 0
    Calls: smoothRaster ... solve -> solve -> solve.default -> .handleSimpleError -> h
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
    Error(s) in re-building vignettes:
    --- re-building ‘a_Introduction.Rmd’ using rmarkdown
    Loading required package: sp
    Please note that rgdal will be retired by the end of 2023,
    plan transition to sf/stars/terra functions using GDAL and PROJ
    at your earliest convenience.
    
    rgdal: version: 1.5-32, (SVN revision 1176)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
    Path to GDAL shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rgdal/gdal
    GDAL binary built with GEOS: FALSE
    Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
    Path to PROJ shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-7
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
    Loading required package: lattice
    
    Attaching package: 'latticeExtra'
    
    The following object is masked from 'package:ggplot2':
    
     layer
    
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Warning: Use of `occs[[xIndex]]` is discouraged. Use `.data[[xIndex]]` instead.
    Warning: Use of `occs[[yIndex]]` is discouraged. Use `.data[[yIndex]]` instead.
    Using decimalLongitude, decimalLatitude, and depth
     as x, y, and z coordinates, respectively.
    Using decimalLongitude, decimalLatitude, and depth
     as x, y, and z coordinates, respectively.
    Warning: Removed 174 rows containing non-finite values (stat_boxplot).
    Warning: Removed 174 rows containing non-finite values (stat_boxplot).
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Quitting from lines 214-221 (a_Introduction.Rmd)
    Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics:
    [distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
    --- failed re-building ‘a_Introduction.Rmd’
    
    --- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown
    Loading required package: spam
    Spam version 2.8-0 (2022-01-05) is loaded.
    Type 'help( Spam)' or 'demo( spam)' for a short introduction
    and overview of this package.
    Help for individual functions is also obtained by adding the
    suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
    
    Attaching package: 'spam'
    
    The following objects are masked from 'package:base':
    
     backsolve, forwardsolve
    
    Loading required package: viridis
    
    Try help(fields) to get started.
    --- finished re-building ‘b_RasterProcessing.Rmd’
    
    --- re-building ‘c_DataSampling.Rmd’ using rmarkdown
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Warning: Use of `occs[[xIndex]]` is discouraged. Use `.data[[xIndex]]` instead.
    Warning: Use of `occs[[yIndex]]` is discouraged. Use `.data[[yIndex]]` instead.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    --- finished re-building ‘c_DataSampling.Rmd’
    
    --- re-building ‘d_Visualization.Rmd’ using rmarkdown
    Quitting from lines 24-117 (d_Visualization.Rmd)
    Error: processing vignette 'd_Visualization.Rmd' failed with diagnostics:
    [distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
    --- failed re-building ‘d_Visualization.Rmd’
    
    --- re-building ‘e_GLMWorkflow.Rmd’ using rmarkdown
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Using decimalLongitude and decimalLatitude
     as x and y coordinates, respectively.
    Joining, by = c("decimalLongitude", "decimalLatitude")
    Joining, by = c("decimalLongitude", "decimalLatitude")
    Joining, by = c("decimalLongitude", "decimalLatitude")
    Warning: Use of `occ_dat[[occ_datIndices$xIndex]]` is discouraged. Use `.data[[occ_datIndices$xIndex]]` instead.
    Warning: Use of `occ_dat[[occ_datIndices$yIndex]]` is discouraged. Use `.data[[occ_datIndices$yIndex]]` instead.
    Quitting from lines 138-145 (e_GLMWorkflow.Rmd)
    Error: processing vignette 'e_GLMWorkflow.Rmd' failed with diagnostics:
    [distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
    --- failed re-building ‘e_GLMWorkflow.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘a_Introduction.Rmd’ ‘d_Visualization.Rmd’ ‘e_GLMWorkflow.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64