CRAN Package Check Results for Package lmeNB

Last updated on 2022-06-10 15:51:39 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 8.19 45.55 53.74 NOTE
r-devel-linux-x86_64-debian-gcc 1.3 5.76 34.91 40.67 NOTE
r-devel-linux-x86_64-fedora-clang 1.3 67.74 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3 61.55 NOTE
r-devel-windows-x86_64 1.3 19.00 60.00 79.00 NOTE
r-patched-linux-x86_64 1.3 7.41 43.84 51.25 NOTE
r-release-linux-x86_64 1.3 NOTE
r-release-macos-arm64 1.3 20.00 NOTE
r-release-macos-x86_64 1.3 27.00 NOTE
r-release-windows-x86_64 1.3 18.00 64.00 82.00 NOTE
r-oldrel-macos-arm64 1.3 27.00 NOTE
r-oldrel-macos-x86_64 1.3 36.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3 14.00 61.00 75.00 NOTE

Check Details

Version: 1.3
Check: R code for possible problems
Result: NOTE
    CP1.ar1: no visible global function definition for 'integrate'
    MCCP.ar1: no visible global function definition for 'integrate'
    Pmax.non: no visible global function definition for 'dnbinom'
    Pmax.non: no visible global function definition for 'pnbinom'
    Pmax1: no visible global function definition for 'integrate'
    Psum.non: no visible global function definition for 'dnbinom'
    Psum.non: no visible global function definition for 'pnbinom'
    Psum1: no visible global function definition for 'integrate'
    RElmeNB: no visible global function definition for 'integrate'
    ar1.2.mmg: no visible global function definition for 'dgamma'
    ar1.fun: no visible global function definition for 'dnbinom'
    ar1.intg: no visible global function definition for 'dgamma'
    ar1.lk: no visible global function definition for 'integrate'
    ar1.ln.intg: no visible global function definition for 'dlnorm'
    ar1.ln2.mmg: no visible global function definition for 'dlnorm'
    ar1.mm.ln: no visible global function definition for 'dlnorm'
    ar1.mmg: no visible global function definition for 'dgamma'
    ar22.fun: no visible global function definition for 'dnbinom'
    ar22.fun: no visible global function definition for 'pnbinom'
    cum.fun: no visible global function definition for 'dgamma'
    cum.fun: no visible global function definition for 'pnbinom'
    cum1.ln: no visible global function definition for 'dlnorm'
    cum1.ln: no visible global function definition for 'pnbinom'
    densYijGivenYij_1AndGY: no visible global function definition for
     'pnbinom'
    densYijGivenYij_1AndGY: no visible global function definition for
     'dnbinom'
    dens_Yi.gY: no visible global function definition for 'dnbinom'
    fitParaAR1: no visible global function definition for 'optim'
    fitParaIND: no visible global function definition for 'optim'
    fitSemiAR1: no visible global function definition for 'optim'
    fitSemiAR1: no visible global function definition for 'optimize'
    fitSemiIND: no visible global function definition for 'optim'
    fitSemiIND: no visible global function definition for 'optimize'
    formulaToDat: no visible global function definition for 'model.matrix'
    formulaToDat: no visible global function definition for
     'model.response'
    formulaToDat: no visible global function definition for 'model.frame'
    formulaToDat: no visible binding for global variable 'na.omit'
    formulaToDat: no visible global function definition for 'update'
    index.batch: no visible global function definition for 'sd'
    index.batch: no visible global function definition for 'quantile'
    index.batch: no visible global function definition for 'model.response'
    index.batch: no visible global function definition for 'model.frame'
    int.denRE: no visible global function definition for 'dlnorm'
    int.denRE: no visible global function definition for 'dgamma'
    int.fun: no visible global function definition for 'dgamma'
    int1.ln: no visible global function definition for 'dlnorm'
    lk.fun: no visible global function definition for 'integrate'
    lk.ln.fun: no visible global function definition for 'integrate'
    lmeNB: no visible global function definition for 'optim'
    lmeNB.sp.ind: no visible global function definition for 'var'
    lmeNB.sp.ind: no visible binding for global variable 'quantile'
    max.fun: no visible global function definition for 'dgamma'
    max.fun: no visible global function definition for 'pnbinom'
    max.ln: no visible global function definition for 'dlnorm'
    max.ln: no visible global function definition for 'pnbinom'
    mmS.fun: no visible global function definition for 'rnbinom'
    pp.ci: no visible global function definition for 'qnorm'
    ppv.ci: no visible global function definition for 'qnorm'
    print.LinearMixedEffectNBFreq: no visible global function definition
     for 'qnorm'
    rNBME.R: no visible global function definition for 'rgamma'
    rNBME.R: no visible global function definition for 'rlnorm'
    rNBME.R: no visible global function definition for 'runif'
    rNBME.R: no visible global function definition for 'rbinom'
    rNBME.R: no visible global function definition for 'rnorm'
    rNBME.R: no visible global function definition for 'rnbinom'
    rbb: no visible global function definition for 'rbeta'
    rbb: no visible global function definition for 'rbinom'
    rnb.ar1: no visible global function definition for 'rnbinom'
    Undefined global functions or variables:
     dgamma dlnorm dnbinom integrate model.frame model.matrix
     model.response na.omit optim optimize pnbinom qnorm quantile rbeta
     rbinom rgamma rlnorm rnbinom rnorm runif sd update var
    Consider adding
     importFrom("stats", "dgamma", "dlnorm", "dnbinom", "integrate",
     "model.frame", "model.matrix", "model.response", "na.omit",
     "optim", "optimize", "pnbinom", "qnorm", "quantile",
     "rbeta", "rbinom", "rgamma", "rlnorm", "rnbinom", "rnorm",
     "runif", "sd", "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3
Check: compiled code
Result: NOTE
    File ‘lmeNB/libs/lmeNB.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc