Last updated on 2022-06-20 14:51:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 37.40 | 326.17 | 363.57 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 28.61 | 243.82 | 272.43 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 461.55 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 467.30 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.1 | 39.00 | 316.00 | 355.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.1 | 31.80 | 311.18 | 342.98 | NOTE | |
| r-release-linux-x86_64 | 0.1.1 | 24.71 | 304.07 | 328.78 | NOTE | |
| r-release-macos-arm64 | 0.1.1 | 118.00 | NOTE | |||
| r-release-macos-x86_64 | 0.1.1 | 165.00 | NOTE | |||
| r-release-windows-x86_64 | 0.1.1 | 37.00 | 317.00 | 354.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.1 | 152.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.1.1 | 212.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.1.1 | 70.00 | 315.00 | 385.00 | NOTE |
Version: 0.1.1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.1
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'BSgenome.Hsapiens.UCSC.hg19' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.1
Check: R code for possible problems
Result: NOTE
BinBam: no visible binding for global variable
'BSgenome.Hsapiens.UCSC.hg19'
BinBam: no visible global function definition for 'seqlengths'
BinBam: no visible global function definition for 'assays'
BinBam: no visible global function definition for 'subsetByOverlaps'
ReadBed: no visible global function definition for 'read.table'
aggregateCounts: no visible global function definition for 'aggregate'
callUnknowns: no visible global function definition for 'dnorm'
callUnknowns: no visible global function definition for 'rnorm'
createReferenceSetFromCounts: no visible binding for global variable
'sd'
createReferenceSetFromCounts: no visible global function definition for
'cor'
createReferenceSetFromCounts: no visible global function definition for
'write.csv'
createReferenceSetFromCounts: no visible global function definition for
'write.table'
doPCA: no visible global function definition for 'prcomp'
find.excl.bins: no visible binding for global variable 'sd'
find.excl.bins: no visible global function definition for 'sd'
find.excl.bins: no visible global function definition for 'median'
findBaseline: no visible binding for global variable 'sd'
findBaseline: no visible global function definition for 'sd'
findBaseline: no visible global function definition for 'median'
findBaseline: no visible global function definition for 'mad'
gcCorrectOneSample: no visible global function definition for 'sd'
gcCorrectOneSample: no visible global function definition for 'pdf'
gcCorrectOneSample: no visible global function definition for 'boxplot'
gcCorrectOneSample: no visible global function definition for 'dev.off'
gcCorrectOneSample: no visible global function definition for
'aggregate'
gcCorrectOneSampleLoess: no visible global function definition for
'boxplot'
gcCorrectOneSampleLoess: no visible global function definition for
'lowess'
makeBinnedCountsFile: no visible global function definition for
'write.table'
makeGCContentData: no visible binding for global variable
'BSgenome.Hsapiens.UCSC.hg19'
makeGCContentData: no visible global function definition for
'seqlengths'
makeGCContentPerPos: no visible binding for global variable
'BSgenome.Hsapiens.UCSC.hg19'
plotTestSample: no visible global function definition for 'par'
plotTestSample: no visible global function definition for 'points'
plotTestSample: no visible global function definition for 'axis'
plotTestSample: no visible global function definition for 'title'
plotTestSample: no visible global function definition for 'abline'
testUnknowns: no visible global function definition for 'write.csv'
writeCleanedCountsFile: no visible global function definition for
'write.table'
writeResultsToFile: no visible global function definition for
'write.table'
Undefined global functions or variables:
BSgenome.Hsapiens.UCSC.hg19 abline aggregate assays axis boxplot cor
dev.off dnorm lowess mad median par pdf points prcomp read.table
rnorm sd seqlengths subsetByOverlaps title write.csv write.table
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "abline", "axis", "boxplot", "par", "points",
"title")
importFrom("stats", "aggregate", "cor", "dnorm", "lowess", "mad",
"median", "prcomp", "rnorm", "sd")
importFrom("utils", "read.table", "write.csv", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64