CRAN Package Check Results for Package bcTSNE

Last updated on 2023-04-05 10:51:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.11.1 9.79 93.71 103.50 ERROR
r-devel-linux-x86_64-debian-gcc 0.11.1 6.81 71.23 78.04 ERROR
r-devel-linux-x86_64-fedora-clang 0.11.1 135.22 ERROR
r-devel-linux-x86_64-fedora-gcc 0.11.1 142.00 ERROR
r-devel-windows-x86_64 0.11.1 30.00 131.00 161.00 ERROR
r-patched-linux-x86_64 0.11.1 7.38 89.95 97.33 ERROR
r-release-linux-x86_64 0.11.1 6.98 89.73 96.71 NOTE
r-release-macos-arm64 0.11.1 7.00 ERROR
r-release-macos-x86_64 0.11.1 55.00 NOTE
r-release-windows-x86_64 0.11.1 24.00 135.00 159.00 NOTE
r-oldrel-macos-arm64 0.11.1 214.00 NOTE
r-oldrel-macos-x86_64 0.11.1 54.00 NOTE
r-oldrel-windows-ix86+x86_64 0.11.1 24.00 151.00 175.00 NOTE

Check Details

Version: 0.11.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'kBET', 'lisi', 'dlfUtils'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.11.1
Check: C++ specification
Result: NOTE
     Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.11.1
Check: examples
Result: ERROR
    Running examples in ‘bcTSNE-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: bctsne
    > ### Title: Calculate BC t-SNE by orthogonal gradient descent
    > ### Aliases: bctsne
    >
    > ### ** Examples
    >
    > ## Create small simulated dataset, A, with embeded batch effects
    > set.seed(2731)
    > kRid <- 20
    > p <- 100
    > n <- 200
    >
    > W <- matrix(rnorm(p*kRid), kRid)
    > S <- matrix(rnorm(n*kRid), n)
    > z <- sample(1:3, rep = TRUE, size = n)
    > Z <- model.matrix( ~ -1 + as.factor(z))
    > l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
    > A <- (S - Z %*% t(l) ) %*% W
    >
    > ## Scale A to give input, X
    > X <- scale(A)
    >
    > resUnadj <- Rtsne::Rtsne(X) ## Standard t-SNE
    > resAdj <- bctsne(X = X, Z = Z, k = 10) ## Batch-corrected t-SNE
    Warning in type.convert.default(maxIter) :
     'as.is' should be specified by the caller; using TRUE
    Error in bctsne(X = X, Z = Z, k = 10) :
     DLL requires the use of native symbols
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.11.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘splatter’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.11.1
Check: examples
Result: ERROR
    Running examples in ‘bcTSNE-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bctsne
    > ### Title: Calculate BC t-SNE by orthogonal gradient descent
    > ### Aliases: bctsne
    >
    > ### ** Examples
    >
    > ## Create small simulated dataset, A, with embeded batch effects
    > set.seed(2731)
    > kRid <- 20
    > p <- 100
    > n <- 200
    >
    > W <- matrix(rnorm(p*kRid), kRid)
    > S <- matrix(rnorm(n*kRid), n)
    > z <- sample(1:3, rep = TRUE, size = n)
    > Z <- model.matrix( ~ -1 + as.factor(z))
    > l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
    > A <- (S - Z %*% t(l) ) %*% W
    >
    > ## Scale A to give input, X
    > X <- scale(A)
    >
    > resUnadj <- Rtsne::Rtsne(X) ## Standard t-SNE
    > resAdj <- bctsne(X = X, Z = Z, k = 10) ## Batch-corrected t-SNE
    Warning in type.convert.default(maxIter) :
     'as.is' should be specified by the caller; using TRUE
    Error in bctsne(X = X, Z = Z, k = 10) :
     DLL requires the use of native symbols
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.11.1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-macos-arm64