Last updated on 2023-06-02 06:53:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 126.98 | 403.25 | 530.23 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 120.30 | 1254.89 | 1375.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 2081.37 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 2132.10 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.0 | 107.00 | 279.00 | 386.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.0 | NOTE | ||||
| r-release-linux-x86_64 | 0.1.0 | 99.62 | 1283.43 | 1383.05 | ERROR | |
| r-release-macos-arm64 | 0.1.0 | 143.00 | NOTE | |||
| r-release-macos-x86_64 | 0.1.0 | 211.00 | NOTE | |||
| r-release-windows-x86_64 | 0.1.0 | 142.00 | 0.00 | 142.00 | FAIL | |
| r-oldrel-macos-arm64 | 0.1.0 | 140.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 152.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 130.00 | 272.00 | 402.00 | NOTE |
Version: 0.1.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20m/31m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phacking)
>
> test_check("phacking")
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000307 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.07 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.065 seconds (Warm-up)
Chain 1: 0.984 seconds (Sampling)
Chain 1: 2.049 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.00018 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.8 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.038 seconds (Warm-up)
Chain 2: 1.015 seconds (Sampling)
Chain 2: 2.053 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000184 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.84 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 1.249 seconds (Warm-up)
Chain 3: 0.846 seconds (Sampling)
Chain 3: 2.095 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000179 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.79 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.868 seconds (Warm-up)
Chain 4: 0.949 seconds (Sampling)
Chain 4: 1.817 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000232 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.32 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 2.71 seconds (Warm-up)
Chain 1: 1.73 seconds (Sampling)
Chain 1: 4.44 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000172 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.72 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 2.755 seconds (Warm-up)
Chain 2: 2.049 seconds (Sampling)
Chain 2: 4.804 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000199 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.99 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 2.661 seconds (Warm-up)
Chain 3: 1.906 seconds (Sampling)
Chain 3: 4.567 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000175 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.75 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 2.583 seconds (Warm-up)
Chain 4: 1.851 seconds (Sampling)
Chain 4: 4.434 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.908 seconds (Warm-up)
Chain 1: 5.637 seconds (Sampling)
Chain 1: 6.545 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 72.806 seconds (Warm-up)
Chain 2: 0.232 seconds (Sampling)
Chain 2: 73.038 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 2.1e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 0.303 seconds (Warm-up)
Chain 3: 0.354 seconds (Sampling)
Chain 3: 0.657 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 1.6e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup)
Killed
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘RcppParallel’ ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [30m/34m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phacking)
>
> test_check("phacking")
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00046 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.6 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.947 seconds (Warm-up)
Chain 1: 0.816 seconds (Sampling)
Chain 1: 1.763 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000233 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.33 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.064 seconds (Warm-up)
Chain 2: 1.105 seconds (Sampling)
Chain 2: 2.169 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000281 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.81 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 1.059 seconds (Warm-up)
Chain 3: 0.873 seconds (Sampling)
Chain 3: 1.932 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000275 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.75 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 1.119 seconds (Warm-up)
Chain 4: 1.081 seconds (Sampling)
Chain 4: 2.2 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000308 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.08 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.621 seconds (Warm-up)
Chain 1: 1.451 seconds (Sampling)
Chain 1: 3.072 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000192 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.92 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.812 seconds (Warm-up)
Chain 2: 1.674 seconds (Sampling)
Chain 2: 3.486 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000258 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.58 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
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Chain 3:
Chain 3: Elapsed Time: 2.519 seconds (Warm-up)
Chain 3: 1.738 seconds (Sampling)
Chain 3: 4.257 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000216 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.16 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
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Chain 4:
Chain 4: Elapsed Time: 1.744 seconds (Warm-up)
Chain 4: 1.533 seconds (Sampling)
Chain 4: 3.277 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.501 seconds (Warm-up)
Chain 1: 0.161 seconds (Sampling)
Chain 1: 0.662 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.546 seconds (Warm-up)
Chain 2: 0.167 seconds (Sampling)
Chain 2: 0.713 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 1.7e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [30m/40m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phacking)
>
> test_check("phacking")
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000682 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 6.82 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.764 seconds (Warm-up)
Chain 1: 1.43 seconds (Sampling)
Chain 1: 3.194 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000414 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 4.14 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 2.11 seconds (Warm-up)
Chain 2: 1.591 seconds (Sampling)
Chain 2: 3.701 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000411 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 4.11 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 1.551 seconds (Warm-up)
Chain 3: 1.293 seconds (Sampling)
Chain 3: 2.844 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000338 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.38 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 1.671 seconds (Warm-up)
Chain 4: 1.725 seconds (Sampling)
Chain 4: 3.396 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000474 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.74 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 2.523 seconds (Warm-up)
Chain 1: 1.528 seconds (Sampling)
Chain 1: 4.051 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000199 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.99 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 2.07 seconds (Warm-up)
Chain 2: 4.447 seconds (Sampling)
Chain 2: 6.517 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000344 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 3.44 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 5.713 seconds (Warm-up)
Chain 3: 4.572 seconds (Sampling)
Chain 3: 10.285 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000369 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.69 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 2.818 seconds (Warm-up)
Chain 4: 1.558 seconds (Sampling)
Chain 4: 4.376 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20m/22m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phacking)
>
> test_check("phacking")
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000395 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.95 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling)
Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.171 seconds (Warm-up)
Chain 1: 0.996 seconds (Sampling)
Chain 1: 2.167 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.00026 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.6 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.229 seconds (Warm-up)
Chain 2: 0.927 seconds (Sampling)
Chain 2: 2.156 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000233 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.33 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 1.358 seconds (Warm-up)
Chain 3: 0.853 seconds (Sampling)
Chain 3: 2.211 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000315 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.15 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup)
Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 1.059 seconds (Warm-up)
Chain 4: 0.989 seconds (Sampling)
Chain 4: 2.048 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00031 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.1 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 2.239 seconds (Warm-up)
Chain 1: 2.135 seconds (Sampling)
Chain 1: 4.374 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000272 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.72 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 2.378 seconds (Warm-up)
Chain 2: 1.978 seconds (Sampling)
Chain 2: 4.356 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.00023 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.3 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 2.055 seconds (Warm-up)
Chain 3: 1.883 seconds (Sampling)
Chain 3: 3.938 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.00026 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.6 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
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Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 2.194 seconds (Warm-up)
Chain 4: 1.547 seconds (Sampling)
Chain 4: 3.741 seconds (Total)
Chain 4:
SAMPLING FOR MODEL 'phacking_rtma' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup)
Killed
Flavor: r-release-linux-x86_64
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 34.7Mb
sub-directories of 1Mb or more:
libs 34.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> nameEx("z_density")
> ### * z_density
>
> flush(stderr()); flush(stdout())
>
> ### Name: z_density
> ### Title: Z-score density plot
> ### Aliases: z_density
>
> ### ** Examples
>
> z_density(money_priming_meta$yi, money_priming_meta$vi)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 4.01 0.32 4.33 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64