Last updated on 2023-08-31 06:53:05 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.90 | 5.16 | 43.48 | 48.64 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.90 | 3.71 | 32.89 | 36.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.90 | 60.15 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.90 | 58.66 | ERROR | |||
| r-devel-windows-x86_64 | 1.90 | 6.00 | 67.00 | 73.00 | ERROR | |
| r-patched-linux-x86_64 | 1.90 | 5.56 | 42.46 | 48.02 | ERROR | |
| r-release-linux-x86_64 | 1.90 | 4.19 | 42.07 | 46.26 | ERROR | |
| r-release-macos-arm64 | 1.90 | 40.00 | OK | |||
| r-release-macos-x86_64 | 1.90 | 50.00 | OK | |||
| r-release-windows-x86_64 | 1.90 | 9.00 | 69.00 | 78.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.90 | 37.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.90 | 56.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.90 | 8.00 | 59.00 | 67.00 | ERROR |
Version: 1.90
Check: examples
Result: ERROR
Running examples in ‘CEDARS-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_project
> ### Title: Create a New CEDARS Project
> ### Aliases: create_project
>
> ### ** Examples
>
> # The code below creates an instance of CEDARS project on a public test MongoDB cluster, populated
> # with fictitious EHR corpora.
>
> # MongoDB credentials
> db_user_name <- "testUser"
> db_user_pw <- "testPW"
> db_host <- "cedars.yvjp6.mongodb.net"
> db_port <- NA
>
> # Using standard MongoDB URL format
> uri_fun <- mongo_uri_standard
>
> # Name for MongoDB database which will contain the CEDARS project
> # In this case we generate a random name
> mongo_database <- find_project_name()
>
> # We create the database and all required collections on a test cluster
> create_project(uri_fun, db_user_name, db_user_pw, db_host, db_port, mongo_database,
+ "CEDARS Example Project", "Dr Smith")
Error: cannot create a new collection -- already using 500 collections of 500
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.90
Check: data for non-ASCII characters
Result: NOTE
Note: found 907 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.90
Check: examples
Result: ERROR
Running examples in ‘CEDARS-Ex.R’ failed
The error most likely occurred in:
> ### Name: create_project
> ### Title: Create a New CEDARS Project
> ### Aliases: create_project
>
> ### ** Examples
>
> # The code below creates an instance of CEDARS project on a public test MongoDB cluster, populated
> # with fictitious EHR corpora.
>
> # MongoDB credentials
> db_user_name <- "testUser"
> db_user_pw <- "testPW"
> db_host <- "cedars.yvjp6.mongodb.net"
> db_port <- NA
>
> # Using standard MongoDB URL format
> uri_fun <- mongo_uri_standard
>
> # Name for MongoDB database which will contain the CEDARS project
> # In this case we generate a random name
> mongo_database <- find_project_name()
>
> # We create the database and all required collections on a test cluster
> create_project(uri_fun, db_user_name, db_user_pw, db_host, db_port, mongo_database,
+ "CEDARS Example Project", "Dr Smith")
Error: cannot create a new collection -- already using 500 collections of 500
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64