CRAN Package Check Results for Package mudata2

Last updated on 2023-08-31 14:52:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 8.22 1269.22 1277.44 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.3 7.21 107.20 114.41 OK
r-devel-linux-x86_64-fedora-clang 1.1.3 1898.71 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1.3 193.12 OK
r-devel-windows-x86_64 1.1.3 11.00 0.00 11.00 FAIL
r-patched-linux-x86_64 1.1.3 8.84 135.37 144.21 OK
r-release-linux-x86_64 1.1.3 5.89 139.95 145.84 OK
r-release-macos-arm64 1.1.3 62.00 OK
r-release-macos-x86_64 1.1.3 106.00 OK
r-release-windows-x86_64 1.1.3 13.00 101.00 114.00 ERROR
r-oldrel-macos-arm64 1.1.3 57.00 OK
r-oldrel-macos-x86_64 1.1.3 79.00 OK
r-oldrel-windows-x86_64 1.1.3 13.00 156.00 169.00 ERROR

Additional issues

M1mac

Check Details

Version: 1.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [20m/22m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # This file is part of the standard setup for testthat.
     > # It is recommended that you do not modify it.
     > #
     > # Where should you do additional test configuration?
     > # Learn more about the roles of various files in:
     > # * https://r-pkgs.org/tests.html
     > # * https://testthat.r-lib.org/reference/test_package.html#special-files
     >
     > library(testthat)
     > library(mudata2)
    
     Attaching package: 'mudata2'
    
     The following object is masked from 'package:testthat':
    
     matches
    
     >
     > test_check("mudata2")
     Guessing x columns: depth
     Killed
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [30m/37m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # This file is part of the standard setup for testthat.
     > # It is recommended that you do not modify it.
     > #
     > # Where should you do additional test configuration?
     > # Learn more about the roles of various files in:
     > # * https://r-pkgs.org/tests.html
     > # * https://testthat.r-lib.org/reference/test_package.html#special-files
     >
     > library(testthat)
     > library(mudata2)
    
     Attaching package: 'mudata2'
    
     The following object is masked from 'package:testthat':
    
     matches
    
     >
     > test_check("mudata2")
     Guessing x columns: depth
     Replacing types ecclimate/data/dataset/character with ecclimate/data/dataset/a_new_type
     Replacing types ecclimate/data/dataset/character with ecclimate/data/dataset/a_new_type
     Replacing types ecclimate/data/date/datetime with ecclimate/data/date/date
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
    
     *** caught segfault ***
     address 0x30, cause 'memory not mapped'
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.3
Check: tests
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    > write_mudata(kentvillegreenwood, outfile)
    Using write_mudata_dir() to write to D:\temp\RtmpIJ9Deg\file2f828304232f0.mudata
    > md <- read_mudata(outfile)
    Reading from D:/temp/RtmpIJ9Deg/file2f828304232f0.mudata
    > unlink(outfile)
    >
    > # read/write to JSON
    > outfile <- tempfile(fileext = ".json")
    > write_mudata(kentvillegreenwood, outfile)
    > md <- read_mudata(outfile)
    > unlink(outfile)
    >
    >
    >
    >
    > ### * <FOOTER>
    > ###
    > cleanEx()
    > options(digits = 7L)
    > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
    Time elapsed: 6.33 0.55 6.73 NA NA
    > grDevices::dev.off()
    null device
     1
    > ###
    > ### Local variables: ***
    > ### mode: outline-minor ***
    > ### outline-regexp: "\\(> \\)?### [*]+" ***
    > ### End: ***
    > quit('no')
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running 'testthat.R' [7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # This file is part of the standard setup for testthat.
     > # It is recommended that you do not modify it.
     > #
     > # Where should you do additional test configuration?
     > # Learn more about the roles of various files in:
     > # * https://r-pkgs.org/tests.html
     > # * https://testthat.r-lib.org/reference/test_package.html#special-files
     >
     > library(testthat)
     > library(mudata2)
    
     Attaching package: 'mudata2'
    
     The following object is masked from 'package:testthat':
    
     matches
    
     >
     > test_check("mudata2")
     Guessing x columns: depth
     Reading from D:/temp/RtmpExAET0/file1db784ef84874
     Reading from D:/temp/RtmpExAET0/file1db78480334e
     Error in x$add_result(...) : attempt to apply non-function
     Calls: test_check ... <Anonymous> -> o_apply -> lapply -> FUN -> <Anonymous>
     In addition: There were 50 or more warnings (use warnings() to see the first 50)
     Execution halted
Flavor: r-release-windows-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running 'testthat.R' [63s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # This file is part of the standard setup for testthat.
     > # It is recommended that you do not modify it.
     > #
     > # Where should you do additional test configuration?
     > # Learn more about the roles of various files in:
     > # * https://r-pkgs.org/tests.html
     > # * https://testthat.r-lib.org/reference/test_package.html#special-files
     >
     > library(testthat)
     > library(mudata2)
    
     Attaching package: 'mudata2'
    
     The following object is masked from 'package:testthat':
    
     matches
    
     >
     > test_check("mudata2")
     Guessing x columns: depth
     Reading from D:/temp/RtmpaiXgCk/file7184135191a
     Reading from D:/temp/RtmpaiXgCk/file7184730a622
     Replacing types ecclimate/data/dataset/character with ecclimate/data/dataset/a_new_type
     Replacing types ecclimate/data/dataset/character with ecclimate/data/dataset/a_new_type
     Reading from D:/temp/RtmpaiXgCk/file718474757d4e
     Replacing types ecclimate/data/date/datetime with ecclimate/data/date/date
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Converting POSIXt column to UTC
     Reading from D:/temp/RtmpaiXgCk/file718421bc71e3.mudata
     Reading from D:/temp/RtmpaiXgCk/file71846a134bd3.mudata
     Reading from D:/temp/RtmpaiXgCk/file71846ddf1d75.mudata
     Reading from D:/temp/RtmpaiXgCk/file718445383e24.mudata
     Reading from D:/temp/RtmpaiXgCk/file718426a973ae
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns:
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: xcol
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: depth
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: date
     Guessing x columns: depth
     Guessing x columns: depth
     OGR: Unsupported geometry type
     OGR: Unsupported geometry type
     OGR: Unsupported geometry type
     OGR: Unsupported geometry type
     OGR: Unsupported geometry type
     [ FAIL 5 | WARN 0 | SKIP 2 | PASS 882 ]
    
     ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
     • On CRAN (2): 'test-mudata-io.R:534:3', 'test-mudata-io.R:642:3'
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-mudata-io.R:110:3'): type strs are guessed when inappropriate columns exist in columns tbl ──
     Error in `write_mudata_dir(kg2, outfile, update_columns = FALSE, overwrite = TRUE,
     validate = FALSE)`: Error writing mudata to CSV:
     data.csv: Error in vroom_write_(x, file, delim, eol, na_str = na, col_names = col_names, :
     bad value
    
     Backtrace:
     ▆
     1. └─mudata2::write_mudata_dir(kg2, outfile, update_columns = FALSE, overwrite = TRUE, validate = FALSE) at test-mudata-io.R:110:2
     2. └─rlang::abort(glue::glue("Error writing mudata to CSV:\n{error_text_all}"))
     ── Error ('test-mudata-io.R:123:3'): recursive reading is apparent to the user ──
     Error in `write_mudata_dir(kentvillegreenwood, tf2)`: Error writing mudata to CSV:
     data.csv: Error in has_trailing_newline(path) : bad value
    
     locations.csv: Error in vroom_write_(x, file, delim, eol, na_str = na, col_names = col_names, :
     bad value
    
     Backtrace:
     ▆
     1. └─mudata2::write_mudata_dir(kentvillegreenwood, tf2) at test-mudata-io.R:123:2
     2. └─rlang::abort(glue::glue("Error writing mudata to CSV:\n{error_text_all}"))
     ── Error ('test-mudata-io.R:219:3'): autodetection of read function filename extension works ──
     Error in `write_mudata_dir(md, dir_file, overwrite = TRUE, validate = validate,
     update_columns = update_columns, ...)`: Error writing mudata to CSV:
     data.csv: Error in vroom_write_(x, file, delim, eol, na_str = na, col_names = col_names, :
     bad value
    
     Backtrace:
     ▆
     1. └─mudata2::write_mudata(kentvillegreenwood, outfile_zip) at test-mudata-io.R:219:2
     2. └─mudata2::write_mudata_zip(md, filename, ...)
     3. └─mudata2::write_mudata_dir(...)
     4. └─rlang::abort(glue::glue("Error writing mudata to CSV:\n{error_text_all}"))
     ── Error ('test-mudata-io.R:267:3'): retyping on read/write works ──────────────
     Error in `write_mudata_dir(md, dir_file, overwrite = TRUE, validate = validate,
     update_columns = update_columns, ...)`: Error writing mudata to CSV:
     data.csv: Error in has_trailing_newline(path) : bad value
    
     locations.csv: Error in vroom_write_(x, file, delim, eol, na_str = na, col_names = col_names, :
     bad value
    
     Backtrace:
     ▆
     1. └─mudata2::write_mudata_zip(kg2, outfile) at test-mudata-io.R:267:2
     2. └─mudata2::write_mudata_dir(...)
     3. └─rlang::abort(glue::glue("Error writing mudata to CSV:\n{error_text_all}"))
     ── Error ('test-mudata-io.R:480:3'): write directory function doesn't overwrite without permission ──
     Error in `write_mudata_dir(kentvillegreenwood, outfile)`: Error writing mudata to CSV:
     data.csv: Error in vroom_write_(x, file, delim, eol, na_str = na, col_names = col_names, :
     bad value
    
     Backtrace:
     ▆
     1. └─mudata2::write_mudata_dir(kentvillegreenwood, outfile) at test-mudata-io.R:480:2
     2. └─rlang::abort(glue::glue("Error writing mudata to CSV:\n{error_text_all}"))
    
     [ FAIL 5 | WARN 0 | SKIP 2 | PASS 882 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-x86_64