Last updated on 2023-09-27 07:00:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 1.86 | 32.61 | 34.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 1.39 | 26.31 | 27.70 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 42.06 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 43.14 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.0 | 4.00 | 72.00 | 76.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 2.18 | 32.12 | 34.30 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 1.31 | 32.26 | 33.57 | OK | |
| r-release-macos-arm64 | 0.1.0 | 26.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 38.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 4.00 | 41.00 | 45.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | 18.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 28.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 6.00 | 45.00 | 51.00 | OK |
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘bookdown’ ‘knitr’ ‘rmarkdown’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘starticles-Ex.R’ failed
The error most likely occurred in:
> ### Name: starticles
> ### Title: A Generic, Publisher-Independent Template for Writing Scientific
> ### Documents in 'rmarkdown'
> ### Aliases: starticles
> ### Keywords: package
>
> ### ** Examples
>
> # Use a temporary directory ----------------------------
> owd = getwd()
> td = tempfile()
> dir.create(td,recursive=TRUE)
> setwd(td)
> print(td) # To see where files will be
[1] "/tmp/RtmpnzCBiO/working_dir/RtmpqiVhS1/file2408fe6049843f"
>
> # Create the draft template ----------------------------
> rmarkdown::draft("MYARTICLENAME.Rmd","generic_article","starticles",edit=FALSE)
>
> # Render PDF document ----------------------------------
> # Fails for me when run using RStudio "Run examples" link in help,
> # but not when sourced from command line.
>
> # Requires recent version of pandoc (provided by RStudio)
> if (rmarkdown::pandoc_available(version="2.17"))
+ rmarkdown::render("MYARTICLENAME/MYARTICLENAME.Rmd",
+ envir=new.env(parent = globalenv()))
processing file: MYARTICLENAME.Rmd
output file: MYARTICLENAME.knit.md
/usr/local/clang/bin/pandoc +RTS -K512m -RTS MYARTICLENAME.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output MYARTICLENAME.tex --lua-filter /data/gannet/ripley/R/test-clang/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --template generic_article_template.tex --number-sections --highlight-style tango --pdf-engine pdflatex --wrap preserve --variable tables=yes --standalone -Mhas-frontmatter=false --citeproc
! Undefined control sequence.
l.364 ...ticle at the end of a sentence (\citeproc
{ref-horvath2018dna}{Horva...
Error: LaTeX failed to compile MYARTICLENAME.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See MYARTICLENAME.log for more info.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘test.starticles.R’ [5s/16s]
Running the tests in ‘tests/test.starticles.R’ failed.
Complete output:
> # Use a temporary directory ----------------------------
> owd = getwd()
> td = tempfile()
> dir.create(td,recursive=TRUE)
> setwd(td)
> print(td) # To see where files will be
[1] "/tmp/RtmpnzCBiO/working_dir/RtmpMb0y8y/file240e7b3af45a4c"
>
> # Create the draft template ----------------------------
> rmarkdown::draft("MYARTICLENAME.Rmd","generic_article","starticles",edit=FALSE)
>
> # Render PDF document ----------------------------------
> # Fails for me when run using RStudio "Run examples" link in help,
> # but not when sourced from command line.
>
> # Requires recent version of pandoc (provided by RStudio)
> if (rmarkdown::pandoc_available(version="2.17"))
+ rmarkdown::render("MYARTICLENAME/MYARTICLENAME.Rmd",
+ envir=new.env(parent = globalenv()))
processing file: MYARTICLENAME.Rmd
output file: MYARTICLENAME.knit.md
/usr/local/clang/bin/pandoc +RTS -K512m -RTS MYARTICLENAME.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output MYARTICLENAME.tex --lua-filter /data/gannet/ripley/R/test-clang/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --template generic_article_template.tex --number-sections --highlight-style tango --pdf-engine pdflatex --wrap preserve --variable tables=yes --standalone -Mhas-frontmatter=false --citeproc
! Undefined control sequence.
l.364 ...ticle at the end of a sentence (\citeproc
{ref-horvath2018dna}{Horva...
Error: LaTeX failed to compile MYARTICLENAME.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See MYARTICLENAME.log for more info.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang