CRAN Package Check Results for Package abn

Last updated on 2024-03-28 07:52:43 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.6 209.48 220.94 430.42 NOTE --no-tests
r-devel-linux-x86_64-debian-gcc 3.0.6 172.37 165.27 337.64 NOTE --no-tests
r-devel-linux-x86_64-fedora-clang 3.0.6 2455.68 ERROR
r-devel-linux-x86_64-fedora-gcc 3.0.6 2467.11 ERROR
r-devel-windows-x86_64 3.0.6 175.00 586.00 761.00 NOTE
r-release-linux-x86_64 3.0.6 202.65 222.37 425.02 NOTE --no-tests
r-release-macos-arm64 3.0.6 460.00 ERROR
r-release-macos-x86_64 3.0.6 873.00 ERROR
r-release-windows-x86_64 3.0.6 215.00 567.00 782.00 ERROR
r-oldrel-macos-arm64 3.0.6 419.00 ERROR
r-oldrel-windows-x86_64 3.0.6 211.00 543.00 754.00 ERROR

Additional issues

ATLAS MKL noLD OpenBLAS

Check Details

Version: 3.0.6
Flags: --no-tests
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 3.0.6
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: extdata 3.0Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 3.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [30m/73m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.0.6 (2024-03-21) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Loading required package: sp This is INLA_24.02.09 built 2024-02-09 03:35:28 UTC. - See www.r-inla.org/contact-us for how to get help. - List available models/likelihoods/etc with inla.list.models() - Use inla.doc(<NAME>) to access documentation Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged boundary (singular) fit: see help('isSingular') Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [30m/72m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.0.6 (2024-03-21) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Loading required package: sp This is INLA_24.02.09 built 2024-02-09 03:35:28 UTC. - See www.r-inla.org/contact-us for how to get help. - List available models/likelihoods/etc with inla.list.models() - Use inla.doc(<NAME>) to access documentation Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged boundary (singular) fit: see help('isSingular') Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.0.6
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 3.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [324s/327s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7 4. │ └─base::withCallingHandlers(...) 5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9 6. └─abn::buildScoreCache.bayes(...) 7. └─... %do% ... 8. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 9. └─base::library(p, character.only = TRUE) [ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-release-macos-arm64

Version: 3.0.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘data_simulation.Rmd’ using rmarkdown File fit_model-1.png not found in resource path Error: processing vignette 'data_simulation.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘data_simulation.Rmd’ --- re-building ‘mixed_effect_BN_model.Rmd’ using rmarkdown --- finished re-building ‘mixed_effect_BN_model.Rmd’ --- re-building ‘model_specification.Rmd’ using rmarkdown --- finished re-building ‘model_specification.Rmd’ --- re-building ‘multiprocessing.Rmd’ using rmarkdown File benchmarkBoxPlot-1.png not found in resource path Error: processing vignette 'multiprocessing.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘multiprocessing.Rmd’ --- re-building ‘paper.Rmd’ using rmarkdown --- finished re-building ‘paper.Rmd’ --- re-building ‘parameter_learning.Rmd’ using rmarkdown File unnamed-chunk-3-1.png not found in resource path Error: processing vignette 'parameter_learning.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building ‘parameter_learning.Rmd’ --- re-building ‘quick_start_example.Rmd’ using rmarkdown --- finished re-building ‘quick_start_example.Rmd’ --- re-building ‘structure_learning.Rmd’ using rmarkdown --- finished re-building ‘structure_learning.Rmd’ SUMMARY: processing the following files failed: ‘data_simulation.Rmd’ ‘multiprocessing.Rmd’ ‘parameter_learning.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 3.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [10m/10m] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7 4. │ └─base::withCallingHandlers(...) 5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9 6. └─abn::buildScoreCache.bayes(...) 7. └─... %do% ... 8. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 9. └─base::library(p, character.only = TRUE) [ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 3.0.6
Check: tests
Result: ERROR Running 'testthat.R' [295s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.0.6 (2024-03-21) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged boundary (singular) fit: see help('isSingular') [ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ] ══ Skipped tests (54) ══════════════════════════════════════════════════════════ • BuildScoreCache(method=mle) crashes with Poisson nodes (1): 'test-fitabn_mle.R:132:3' • INLA is not tested on CRAN (2): 'test-mostprobable.R:203:5', 'test-search_hillclimber.R:77:7' • Numerical results are not tested for method='bayes' (2): 'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3' • On CRAN (27): 'test-abn-methods.R:212:3', 'test-abn-methods.R:237:3', 'test-abn-methods.R:262:3', 'test-abn-methods.R:287:3', 'test-abn-methods.R:312:3', 'test-abn-methods.R:337:3', 'test-abn-methods.R:362:3', 'test-abn-methods.R:387:3', 'test-abn-methods.R:412:3', 'test-build_score_cache.R:380:3', 'test-build_score_cache.R:428:3', 'test-calc_node_inla_glm.R:2:3', 'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3', 'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3', 'test-fitabn.R:190:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:11:3', 'test-mostprobable.R:78:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3', 'test-simulateabn.R:490:3', 'test-tographviz.R:27:3', 'test-tographviz.R:171:3' • Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3' • empty test (21): 'test-abn-methods.R:15:1', 'test-build_score_cache.R:326:1', 'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1', 'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1', 'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1', 'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1', 'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1', 'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1', 'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1', 'test-fitabn_mle.R:585:1', 'test-simulateabn.R:617:1', 'test-simulateabn.R:688:1', 'test-simulateabn.R:787:1', 'test-simulateabn.R:887:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-abn-methods.R:44:3'): print.abnCache() works. ────────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-abn-methods.R:44:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:60:3'): print.abnHeuristic() works. ────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:60:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:79:3'): plot.abnHeuristic() works. ─────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:79:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:105:3'): print.abnHillClimber() works. ─────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:105:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:126:3'): plot.abnHillClimber() works. ──────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:126:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:154:3'): print.abnMostprobable() works. ────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:154:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:175:3'): summary.abnMostprobable() works. ──────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:175:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:196:3'): plot.abnMostprobable() works. ─────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:196:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7 ── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7 ── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7 ── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7 ── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7 ── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7 ── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7 6. │ └─testthat:::expect_condition_matching(...) 7. │ └─testthat:::quasi_capture(...) 8. │ ├─testthat (local) .capture(...) 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache.R:204:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:181:5 ── Failure ('test-build_score_cache.R:258:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:220:5 ── Failure ('test-build_score_cache.R:321:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:308:5 ── Failure ('test-build_score_cache_bayes.R:11:5'): General behaviour of buildScoreCache.bayes() ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:10:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:11:5 ── Failure ('test-build_score_cache_bayes.R:17:5'): General behaviour of buildScoreCache.bayes() ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:16:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:17:5 ── Error ('test-build_score_cache_bayes.R:20:3'): General behaviour of buildScoreCache.bayes() ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-build_score_cache_bayes.R:20:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─abn::buildScoreCache(...) 5. └─abn::buildScoreCache.bayes(...) 6. └─... %do% ... 7. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 8. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache_bayes.R:43:5'): buildScoreCache.bayes() with Gaussian nodes ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' ── Failure ('test-build_score_cache_bayes.R:98:5'): buildScoreCache.bayes() with Binomial nodes ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' ── Error ('test-build_score_cache_bayes.R:125:3'): buildScoreCache.bayes() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-build_score_cache_bayes.R:125:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-mostprobable.R:5:3'): Test mostProbable() works ──────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-mostprobable.R:5:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-mostprobable.R:211:3'): mostProbable() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-mostprobable.R:211:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_heuristic.R:9:3'): searchHeuristic() works. ───────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-search_heuristic.R:9:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_hillclimber.R:38:5'): searchHillClimber() is backward compatible with `ex1.dag.data` ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-search_hillclimber.R:38:5 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_hillclimber.R:85:3'): searchHillClimber() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-search_hillclimber.R:85:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) [ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 3.0.6
Check: tests
Result: ERROR Running ‘testthat.R’ [298s/298s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7 4. │ └─base::withCallingHandlers(...) 5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9 6. └─abn::buildScoreCache.bayes(...) 7. └─... %do% ... 8. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 9. └─base::library(p, character.only = TRUE) [ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 3.0.6
Check: tests
Result: ERROR Running 'testthat.R' [304s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.0.6 (2024-03-21) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged Iteration 1 - deviance = 798.6166 - criterion = 1.874215 Iteration 2 - deviance = 797.3505 - criterion = 0.03945357 Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06 Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13 converged Iteration 1 - deviance = 800.841 - criterion = 1.953695 Iteration 2 - deviance = 799.4241 - criterion = 0.04384531 Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06 Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13 converged Iteration 1 - deviance = 733.9755 - criterion = 1.056032 Iteration 2 - deviance = 730.6673 - criterion = 0.04998392 Iteration 3 - deviance = 730.577 - criterion = 0.002808114 Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06 Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11 converged boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Iteration 1 - deviance = 801.89 - criterion = 2.014199 Iteration 2 - deviance = 800.5341 - criterion = 0.04426251 Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06 Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13 converged boundary (singular) fit: see help('isSingular') [ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ] ══ Skipped tests (54) ══════════════════════════════════════════════════════════ • BuildScoreCache(method=mle) crashes with Poisson nodes (1): 'test-fitabn_mle.R:132:3' • INLA is not tested on CRAN (2): 'test-mostprobable.R:203:5', 'test-search_hillclimber.R:77:7' • Numerical results are not tested for method='bayes' (2): 'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3' • On CRAN (27): 'test-abn-methods.R:212:3', 'test-abn-methods.R:237:3', 'test-abn-methods.R:262:3', 'test-abn-methods.R:287:3', 'test-abn-methods.R:312:3', 'test-abn-methods.R:337:3', 'test-abn-methods.R:362:3', 'test-abn-methods.R:387:3', 'test-abn-methods.R:412:3', 'test-build_score_cache.R:380:3', 'test-build_score_cache.R:428:3', 'test-calc_node_inla_glm.R:2:3', 'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3', 'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3', 'test-fitabn.R:190:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:11:3', 'test-mostprobable.R:78:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3', 'test-simulateabn.R:490:3', 'test-tographviz.R:27:3', 'test-tographviz.R:171:3' • Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3' • empty test (21): 'test-abn-methods.R:15:1', 'test-build_score_cache.R:326:1', 'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1', 'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1', 'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1', 'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1', 'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1', 'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1', 'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1', 'test-fitabn_mle.R:585:1', 'test-simulateabn.R:617:1', 'test-simulateabn.R:688:1', 'test-simulateabn.R:787:1', 'test-simulateabn.R:887:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-abn-methods.R:44:3'): print.abnCache() works. ────────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-abn-methods.R:44:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:60:3'): print.abnHeuristic() works. ────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:60:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:79:3'): plot.abnHeuristic() works. ─────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:79:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:105:3'): print.abnHillClimber() works. ─────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:105:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:126:3'): plot.abnHillClimber() works. ──────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:126:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:154:3'): print.abnMostprobable() works. ────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:154:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:175:3'): summary.abnMostprobable() works. ──────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:175:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-abn-methods.R:196:3'): plot.abnMostprobable() works. ─────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:196:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7 ── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7 ── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7 ── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7 ── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7 ── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7 ── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7 6. │ └─testthat:::expect_condition_matching(...) 7. │ └─testthat:::quasi_capture(...) 8. │ ├─testthat (local) .capture(...) 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache.R:204:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:181:5 ── Failure ('test-build_score_cache.R:258:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:220:5 ── Failure ('test-build_score_cache.R:321:7'): buildScoreCache() is backward compatible ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_no_error(...) at test-build_score_cache.R:308:5 ── Failure ('test-build_score_cache_bayes.R:11:5'): General behaviour of buildScoreCache.bayes() ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:10:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:11:5 ── Failure ('test-build_score_cache_bayes.R:17:5'): General behaviour of buildScoreCache.bayes() ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:16:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:17:5 ── Error ('test-build_score_cache_bayes.R:20:3'): General behaviour of buildScoreCache.bayes() ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-build_score_cache_bayes.R:20:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─abn::buildScoreCache(...) 5. └─abn::buildScoreCache.bayes(...) 6. └─... %do% ... 7. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 8. └─base::library(p, character.only = TRUE) ── Failure ('test-build_score_cache_bayes.R:43:5'): buildScoreCache.bayes() with Gaussian nodes ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' ── Failure ('test-build_score_cache_bayes.R:98:5'): buildScoreCache.bayes() with Binomial nodes ── Expected `{ ... }` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' ── Error ('test-build_score_cache_bayes.R:125:3'): buildScoreCache.bayes() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-build_score_cache_bayes.R:125:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-mostprobable.R:5:3'): Test mostProbable() works ──────────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-mostprobable.R:5:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-mostprobable.R:211:3'): mostProbable() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-mostprobable.R:211:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_heuristic.R:9:3'): searchHeuristic() works. ───────────── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-search_heuristic.R:9:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_hillclimber.R:38:5'): searchHillClimber() is backward compatible with `ex1.dag.data` ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-search_hillclimber.R:38:5 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) ── Error ('test-search_hillclimber.R:85:3'): searchHillClimber() simple, historic numeric test ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. └─abn::buildScoreCache(...) at test-search_hillclimber.R:85:3 2. └─abn::buildScoreCache.bayes(...) 3. └─... %do% ... 4. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 5. └─base::library(p, character.only = TRUE) [ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64