CRAN Package Check Results for Package packDAMipd

Last updated on 2024-08-19 09:52:27 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 29.27 678.26 707.53 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.0 16.78 397.33 414.11 ERROR
r-devel-linux-x86_64-fedora-clang 1.1.0 1232.04 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1.0 1113.45 ERROR
r-devel-windows-x86_64 1.1.0 29.00 731.00 760.00 ERROR
r-patched-linux-x86_64 1.1.0 25.99 645.23 671.22 ERROR
r-release-linux-x86_64 1.1.0 25.61 642.78 668.39 ERROR
r-release-macos-arm64 1.1.0 250.00 NOTE
r-release-macos-x86_64 1.1.0 445.00 NOTE
r-release-windows-x86_64 1.1.0 19.00 589.00 608.00 ERROR
r-oldrel-macos-arm64 1.1.0 170.00 NOTE
r-oldrel-macos-x86_64 1.1.0 401.00 NOTE
r-oldrel-windows-x86_64 1.1.0 38.00 976.00 1014.00 ERROR

Check Details

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘packDAMipd-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints > ### Title: Create a table to compare the descriptive analysis (short) from > ### gtsummary of two groups, but at different timepoints > ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints > > ### ** Examples > > eg_data <- as.data.frame(list(no = c(1, 2, 3, 4), + mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"), + mark_at_2 = c(12, 34, 23, 45))) > outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data, + c("gender", "mark_at_1", "mark_at_2"), byvar = "gender") The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`: ✖ For variable `mark_at_1` (`gender`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required. ✖ For variable `mark_at_2` (`gender`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required. Error in `dplyr::mutate()`: ℹ In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`. Caused by error in `.data$variable`: ! Column `variable` not found in `.data`. Backtrace: ▆ 1. ├─IPDFileCheck::get_summary_gtsummary(...) 2. │ └─... %>% gtsummary::bold_labels() 3. ├─gtsummary::bold_labels(.) 4. ├─gtsummary::modify_header(., label = "**Variable**") 5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**") 6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest) 7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**") 8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size) 9. │ ├─dplyr::select(...) 10. │ ├─dplyr::mutate(...) 11. │ ├─dplyr::mutate(...) 12. │ └─dplyr:::mutate.data.frame(...) 13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 14. │ ├─base::withCallingHandlers(...) 15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 16. │ └─mask$eval_all_mutate(quo) 17. │ └─dplyr (local) eval() 18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]]) 19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...) 20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE) 21. ├─variable 22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable) 23. │ └─rlang:::data_pronoun_get(...) 24. └─rlang:::abort_data_pronoun(x, call = y) 25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call) Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE Imports includes 29 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: extdata 4.3Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘packDAMipd-Ex.R’ failed The error most likely occurred in: > ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints > ### Title: Create a table to compare the descriptive analysis (short) from > ### gtsummary of two groups, but at different timepoints > ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints > > ### ** Examples > > eg_data <- as.data.frame(list(no = c(1, 2, 3, 4), + mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"), + mark_at_2 = c(12, 34, 23, 45))) > outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data, + c("gender", "mark_at_1", "mark_at_2"), byvar = "gender") The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`: ✖ For variable `mark_at_1` (`gender`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required. ✖ For variable `mark_at_2` (`gender`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required. Error in `dplyr::mutate()`: ℹ In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`. Caused by error in `.data$variable`: ! Column `variable` not found in `.data`. Backtrace: ▆ 1. ├─IPDFileCheck::get_summary_gtsummary(...) 2. │ └─... %>% gtsummary::bold_labels() 3. ├─gtsummary::bold_labels(.) 4. ├─gtsummary::modify_header(., label = "**Variable**") 5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**") 6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest) 7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**") 8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size) 9. │ ├─dplyr::select(...) 10. │ ├─dplyr::mutate(...) 11. │ ├─dplyr::mutate(...) 12. │ └─dplyr:::mutate.data.frame(...) 13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 14. │ ├─base::withCallingHandlers(...) 15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 16. │ └─mask$eval_all_mutate(quo) 17. │ └─dplyr (local) eval() 18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]]) 19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...) 20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE) 21. ├─variable 22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable) 23. │ └─rlang:::data_pronoun_get(...) 24. └─rlang:::abort_data_pronoun(x, call = y) 25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘packDAMipd-Ex.R’ failed The error most likely occurred in: > ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints > ### Title: Create a table to compare the descriptive analysis (short) from > ### gtsummary of two groups, but at different timepoints > ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints > > ### ** Examples > > eg_data <- as.data.frame(list(no = c(1, 2, 3, 4), + mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"), + mark_at_2 = c(12, 34, 23, 45))) > outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data, + c("gender", "mark_at_1", "mark_at_2"), byvar = "gender") Error in `dplyr::mutate()`: ℹ In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`. Caused by error in `.data$variable`: ! Column `variable` not found in `.data`. Backtrace: ▆ 1. ├─IPDFileCheck::get_summary_gtsummary(...) 2. │ └─... %>% gtsummary::bold_labels() 3. ├─gtsummary::bold_labels(.) 4. ├─gtsummary::modify_header(., label = "**Variable**") 5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**") 6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest) 7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**") 8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size) 9. │ ├─dplyr::select(...) 10. │ ├─dplyr::mutate(...) 11. │ ├─dplyr::mutate(...) 12. │ └─dplyr:::mutate.data.frame(...) 13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 14. │ ├─base::withCallingHandlers(...) 15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 16. │ └─mask$eval_all_mutate(quo) 17. │ └─dplyr (local) eval() 18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]]) 19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...) 20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE) 21. ├─variable 22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable) 23. │ └─rlang:::data_pronoun_get(...) 24. └─rlang:::abort_data_pronoun(x, call = y) 25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call) Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc