CRAN Package Check Results for Package bold

Last updated on 2024-08-26 09:49:07 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.0 4.96 55.07 60.03 OK
r-devel-linux-x86_64-debian-gcc 1.3.0 4.04 39.34 43.38 OK
r-devel-linux-x86_64-fedora-clang 1.3.0 99.41 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3.0 93.29 OK
r-devel-windows-x86_64 1.3.0 6.00 76.00 82.00 OK
r-patched-linux-x86_64 1.3.0 5.14 52.81 57.95 OK
r-release-linux-x86_64 1.3.0 3.94 53.19 57.13 ERROR
r-release-macos-arm64 1.3.0 30.00 NOTE
r-release-macos-x86_64 1.3.0 48.00 OK
r-release-windows-x86_64 1.3.0 6.00 74.00 80.00 ERROR
r-oldrel-macos-arm64 1.3.0 29.00 NOTE
r-oldrel-macos-x86_64 1.3.0 58.00 NOTE
r-oldrel-windows-x86_64 1.3.0 6.00 87.00 93.00 OK

Additional issues

M1mac

Check Details

Version: 1.3.0
Check: tests
Result: ERROR Running ‘test-all.R’ [28s/36s] Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > test_check('bold') Loading required package: bold [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] ══ Skipped tests (59) ══════════════════════════════════════════════════════════ • On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3', 'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3', 'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3', 'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3', 'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3', 'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3', 'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3', 'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3', 'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3', 'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3', 'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3', 'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3', 'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3', 'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3', 'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3', 'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3', 'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3', 'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3', 'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3', 'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3', 'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3', 'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3', 'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3', 'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3', 'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3', 'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3', 'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3', 'test-bold_trace.R:42:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ────────────────── <http_500/http_error/error/condition> Error: Internal Server Error (HTTP 500) Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─bold::bold_tax_id(id = 88899, includeTree = 5) 7. └─base::lapply(...) 8. └─bold (local) FUN(X[[i]], ...) 9. └─bold:::.get_response_dep(...) 10. └─out$raise_for_status() 11. ├─fauxpas::http(self, behavior = "stop") 12. └─fauxpas:::http.HttpResponse(self, behavior = "stop") 13. └─tmp$do(response) [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] Error: Test failures Execution halted Ran 12/12 deferred expressions Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.0
Check: tests
Result: ERROR Running ‘test-all.R’ [16s/22s] Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > test_check('bold') Loading required package: bold [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] ══ Skipped tests (59) ══════════════════════════════════════════════════════════ • On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3', 'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3', 'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3', 'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3', 'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3', 'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3', 'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3', 'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3', 'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3', 'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3', 'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3', 'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3', 'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3', 'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3', 'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3', 'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3', 'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3', 'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3', 'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3', 'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3', 'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3', 'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3', 'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3', 'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3', 'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3', 'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3', 'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3', 'test-bold_trace.R:42:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ────────────────── <http_500/http_error/error/condition> Error: Internal Server Error (HTTP 500) Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─bold::bold_tax_id(id = 88899, includeTree = 5) 7. └─base::lapply(...) 8. └─bold (local) FUN(X[[i]], ...) 9. └─bold:::.get_response_dep(...) 10. └─out$raise_for_status() 11. ├─fauxpas::http(self, behavior = "stop") 12. └─fauxpas:::http.HttpResponse(self, behavior = "stop") 13. └─tmp$do(response) [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] Error: Test failures Execution halted Ran 12/12 deferred expressions Flavor: r-release-linux-x86_64

Version: 1.3.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘sangerseqR’ Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.3.0
Check: tests
Result: ERROR Running 'test-all.R' [15s] Running the tests in 'tests/test-all.R' failed. Complete output: > library(testthat) > test_check('bold') Loading required package: bold [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] ══ Skipped tests (59) ══════════════════════════════════════════════════════════ • On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3', 'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3', 'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3', 'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3', 'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3', 'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3', 'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3', 'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3', 'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3', 'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3', 'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3', 'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3', 'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3', 'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3', 'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3', 'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3', 'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3', 'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3', 'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3', 'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3', 'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3', 'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3', 'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3', 'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3', 'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3', 'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3', 'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3', 'test-bold_trace.R:42:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ────────────────── <http_500/http_error/error/condition> Error: Internal Server Error (HTTP 500) Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─bold::bold_tax_id(id = 88899, includeTree = 5) 7. └─base::lapply(...) 8. └─bold (local) FUN(X[[i]], ...) 9. └─bold:::.get_response_dep(...) 10. └─out$raise_for_status() 11. ├─fauxpas::http(self, behavior = "stop") 12. └─fauxpas:::http.HttpResponse(self, behavior = "stop") 13. └─tmp$do(response) [ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ] Error: Test failures Execution halted Ran 12/12 deferred expressions Flavor: r-release-windows-x86_64