Last updated on 2024-09-16 07:49:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.2 | 6.87 | 111.01 | 117.88 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.8.2 | 4.28 | 78.06 | 82.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.8.2 | 187.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.2 | 194.94 | ERROR | |||
| r-devel-windows-x86_64 | 0.8.2 | 11.00 | 115.00 | 126.00 | ERROR | |
| r-patched-linux-x86_64 | 0.8.2 | 6.12 | 124.73 | 130.85 | OK | |
| r-release-linux-x86_64 | 0.8.2 | 6.06 | 123.82 | 129.88 | OK | |
| r-release-macos-arm64 | 0.8.2 | 70.00 | OK | |||
| r-release-macos-x86_64 | 0.8.2 | 194.00 | OK | |||
| r-release-windows-x86_64 | 0.8.2 | 10.00 | 129.00 | 139.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.2 | 84.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.8.2 | 160.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.8.2 | 14.00 | 164.00 | 178.00 | OK |
Version: 0.8.2
Check: examples
Result: ERROR
Running examples in ‘dotwhisker-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: small_multiple
> ### Title: Generate a 'Small Multiple' Plot of Regression Results
> ### Aliases: small_multiple
>
> ### ** Examples
>
> library(broom)
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> # Generate a tidy data frame of regression results from six models
>
> m <- list()
> ordered_vars <- c("wt", "cyl", "disp", "hp", "gear", "am")
> m[[1]] <- lm(mpg ~ wt, data = mtcars)
> m123456_df <- m[[1]] %>% tidy %>% by_2sd(mtcars) %>%
+ mutate(model = "Model 1")
>
> for (i in 2:6) {
+ m[[i]] <- update(m[[i-1]], paste(". ~ . +", ordered_vars[i]))
+ m123456_df <- rbind(m123456_df, m[[i]] %>% tidy %>% by_2sd(mtcars) %>%
+ mutate(model = paste("Model", i)))
+ }
>
> # Generate a 'small multiple' plot
> small_multiple(m123456_df)
Error in `$<-.data.frame`(`*tmp*`, "x_ind", value = c(1L, 1L, 1L, 1L, :
replacement has 36 rows, data has 37
Calls: small_multiple -> $<- -> $<-.data.frame
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.8.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/basic-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Input IDAT size = 2121 bytes
Input file size = 2976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
Output IDAT size = 1854 bytes (267 bytes decrease)
Output file size = 2709 bytes (267 bytes = 8.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ci-1.png
288x288 pixels, 8 bits/pixel, 253 colors in palette
Input IDAT size = 2458 bytes
Input file size = 3307 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
Output IDAT size = 1927 bytes (531 bytes decrease)
Output file size = 2776 bytes (531 bytes = 16.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/multipleModels-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11194 bytes
Input file size = 11284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
Output IDAT size = 8025 bytes (3169 bytes decrease)
Output file size = 8103 bytes (3181 bytes = 28.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/intercept-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11006 bytes
Input file size = 11096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
Output IDAT size = 8248 bytes (2758 bytes decrease)
Output file size = 8326 bytes (2770 bytes = 24.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ggplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9152 bytes
Input file size = 9242 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821
Output IDAT size = 6821 bytes (2331 bytes decrease)
Output file size = 6899 bytes (2343 bytes = 25.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidyData-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Input IDAT size = 2126 bytes
Input file size = 2978 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
Output IDAT size = 1866 bytes (260 bytes decrease)
Output file size = 2718 bytes (260 bytes = 8.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidy-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10170 bytes
Input file size = 10260 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
Output IDAT size = 7144 bytes (3026 bytes decrease)
Output file size = 7222 bytes (3038 bytes = 29.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/regularExpression-1.png
288x288 pixels, 8 bits/pixel, 242 colors in palette
Input IDAT size = 2369 bytes
Input file size = 3185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
Output IDAT size = 1694 bytes (675 bytes decrease)
Output file size = 2510 bytes (675 bytes = 21.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/relabel-1.png
288x288 pixels, 8 bits/pixel, 228 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3349 bytes
Input file size = 4123 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992
Output IDAT size = 2992 bytes (357 bytes decrease)
Output file size = 3070 bytes (1053 bytes = 25.54% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/custom-1.png
288x288 pixels, 8 bits/pixel, 233 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3394 bytes
Input file size = 4183 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042
Output IDAT size = 3042 bytes (352 bytes decrease)
Output file size = 3120 bytes (1063 bytes = 25.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/clm-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 4908 bytes
Input file size = 4986 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
Output IDAT size = 3659 bytes (1249 bytes decrease)
Output file size = 3737 bytes (1249 bytes = 25.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/by2sd-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5566 bytes
Input file size = 5644 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
Output IDAT size = 4018 bytes (1548 bytes decrease)
Output file size = 4096 bytes (1548 bytes = 27.43% decrease)
Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd)
Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics:
'from' must be a finite number
--- failed re-building ‘dotwhisker-vignette.Rmd’
--- re-building ‘kl2007_examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-2-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21594 bytes
Input file size = 22476 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20036
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890
Output IDAT size = 19890 bytes (1704 bytes decrease)
Output file size = 19968 bytes (2508 bytes = 11.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-3-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48668 bytes
Input file size = 48806 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124
Output IDAT size = 38124 bytes (10544 bytes decrease)
Output file size = 38202 bytes (10604 bytes = 21.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-4-1.png
672x768 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26211 bytes
Input file size = 27105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24057
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
Output IDAT size = 24030 bytes (2181 bytes decrease)
Output file size = 24108 bytes (2997 bytes = 11.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-5-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61554 bytes
Input file size = 61716 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
Output IDAT size = 47315 bytes (14239 bytes decrease)
Output file size = 47393 bytes (14323 bytes = 23.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-6-1.png
480x864 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26191 bytes
Input file size = 27085 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
Output IDAT size = 24023 bytes (2168 bytes decrease)
Output file size = 24101 bytes (2984 bytes = 11.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-7-1.png
384x864 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 65710 bytes
Input file size = 65884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
Output IDAT size = 47756 bytes (17954 bytes decrease)
Output file size = 47834 bytes (18050 bytes = 27.40% decrease)
--- finished re-building ‘kl2007_examples.Rmd’
SUMMARY: processing the following file failed:
‘dotwhisker-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.8.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/basic-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Input IDAT size = 2121 bytes
Input file size = 2976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
Output IDAT size = 1854 bytes (267 bytes decrease)
Output file size = 2709 bytes (267 bytes = 8.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ci-1.png
288x288 pixels, 8 bits/pixel, 253 colors in palette
Input IDAT size = 2458 bytes
Input file size = 3307 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
Output IDAT size = 1927 bytes (531 bytes decrease)
Output file size = 2776 bytes (531 bytes = 16.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/multipleModels-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11194 bytes
Input file size = 11284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
Output IDAT size = 8025 bytes (3169 bytes decrease)
Output file size = 8103 bytes (3181 bytes = 28.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/intercept-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11006 bytes
Input file size = 11096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
Output IDAT size = 8248 bytes (2758 bytes decrease)
Output file size = 8326 bytes (2770 bytes = 24.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ggplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9152 bytes
Input file size = 9242 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821
Output IDAT size = 6821 bytes (2331 bytes decrease)
Output file size = 6899 bytes (2343 bytes = 25.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidyData-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Input IDAT size = 2126 bytes
Input file size = 2978 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
Output IDAT size = 1866 bytes (260 bytes decrease)
Output file size = 2718 bytes (260 bytes = 8.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidy-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10170 bytes
Input file size = 10260 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
Output IDAT size = 7144 bytes (3026 bytes decrease)
Output file size = 7222 bytes (3038 bytes = 29.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/regularExpression-1.png
288x288 pixels, 8 bits/pixel, 242 colors in palette
Input IDAT size = 2369 bytes
Input file size = 3185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
Output IDAT size = 1694 bytes (675 bytes decrease)
Output file size = 2510 bytes (675 bytes = 21.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/relabel-1.png
288x288 pixels, 8 bits/pixel, 228 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3349 bytes
Input file size = 4123 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992
Output IDAT size = 2992 bytes (357 bytes decrease)
Output file size = 3070 bytes (1053 bytes = 25.54% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/custom-1.png
288x288 pixels, 8 bits/pixel, 233 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3394 bytes
Input file size = 4183 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042
Output IDAT size = 3042 bytes (352 bytes decrease)
Output file size = 3120 bytes (1063 bytes = 25.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/clm-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 4908 bytes
Input file size = 4986 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
Output IDAT size = 3659 bytes (1249 bytes decrease)
Output file size = 3737 bytes (1249 bytes = 25.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/by2sd-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5566 bytes
Input file size = 5644 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
Output IDAT size = 4018 bytes (1548 bytes decrease)
Output file size = 4096 bytes (1548 bytes = 27.43% decrease)
Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd)
Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics:
'from' must be a finite number
--- failed re-building ‘dotwhisker-vignette.Rmd’
--- re-building ‘kl2007_examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-2-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21594 bytes
Input file size = 22476 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20036
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890
Output IDAT size = 19890 bytes (1704 bytes decrease)
Output file size = 19968 bytes (2508 bytes = 11.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-3-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48668 bytes
Input file size = 48806 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124
Output IDAT size = 38124 bytes (10544 bytes decrease)
Output file size = 38202 bytes (10604 bytes = 21.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-4-1.png
672x768 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26211 bytes
Input file size = 27105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24057
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
Output IDAT size = 24030 bytes (2181 bytes decrease)
Output file size = 24108 bytes (2997 bytes = 11.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-5-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61554 bytes
Input file size = 61716 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
Output IDAT size = 47315 bytes (14239 bytes decrease)
Output file size = 47393 bytes (14323 bytes = 23.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-6-1.png
480x864 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26191 bytes
Input file size = 27085 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
Output IDAT size = 24023 bytes (2168 bytes decrease)
Output file size = 24101 bytes (2984 bytes = 11.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-7-1.png
384x864 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 65710 bytes
Input file size = 65884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
Output IDAT size = 47756 bytes (17954 bytes decrease)
Output file size = 47834 bytes (18050 bytes = 27.40% decrease)
--- finished re-building ‘kl2007_examples.Rmd’
SUMMARY: processing the following file failed:
‘dotwhisker-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8.2
Check: examples
Result: ERROR
Running examples in ‘dotwhisker-Ex.R’ failed
The error most likely occurred in:
> ### Name: small_multiple
> ### Title: Generate a 'Small Multiple' Plot of Regression Results
> ### Aliases: small_multiple
>
> ### ** Examples
>
> library(broom)
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> # Generate a tidy data frame of regression results from six models
>
> m <- list()
> ordered_vars <- c("wt", "cyl", "disp", "hp", "gear", "am")
> m[[1]] <- lm(mpg ~ wt, data = mtcars)
> m123456_df <- m[[1]] %>% tidy %>% by_2sd(mtcars) %>%
+ mutate(model = "Model 1")
>
> for (i in 2:6) {
+ m[[i]] <- update(m[[i-1]], paste(". ~ . +", ordered_vars[i]))
+ m123456_df <- rbind(m123456_df, m[[i]] %>% tidy %>% by_2sd(mtcars) %>%
+ mutate(model = paste("Model", i)))
+ }
>
> # Generate a 'small multiple' plot
> small_multiple(m123456_df)
Error in `$<-.data.frame`(`*tmp*`, "x_ind", value = c(1L, 1L, 1L, 1L, :
replacement has 36 rows, data has 37
Calls: small_multiple -> $<- -> $<-.data.frame
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.8.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/basic-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Input IDAT size = 2121 bytes
Input file size = 2976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
Output IDAT size = 1854 bytes (267 bytes decrease)
Output file size = 2709 bytes (267 bytes = 8.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ci-1.png
288x288 pixels, 8 bits/pixel, 253 colors in palette
Input IDAT size = 2458 bytes
Input file size = 3307 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
Output IDAT size = 1927 bytes (531 bytes decrease)
Output file size = 2776 bytes (531 bytes = 16.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/multipleModels-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11194 bytes
Input file size = 11284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
Output IDAT size = 8025 bytes (3169 bytes decrease)
Output file size = 8103 bytes (3181 bytes = 28.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/intercept-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11006 bytes
Input file size = 11096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
Output IDAT size = 8248 bytes (2758 bytes decrease)
Output file size = 8326 bytes (2770 bytes = 24.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ggplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9157 bytes
Input file size = 9247 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6818
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6818
Output IDAT size = 6818 bytes (2339 bytes decrease)
Output file size = 6896 bytes (2351 bytes = 25.42% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidyData-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Input IDAT size = 2126 bytes
Input file size = 2978 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
Output IDAT size = 1866 bytes (260 bytes decrease)
Output file size = 2718 bytes (260 bytes = 8.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidy-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10170 bytes
Input file size = 10260 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
Output IDAT size = 7144 bytes (3026 bytes decrease)
Output file size = 7222 bytes (3038 bytes = 29.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/regularExpression-1.png
288x288 pixels, 8 bits/pixel, 242 colors in palette
Input IDAT size = 2369 bytes
Input file size = 3185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
Output IDAT size = 1694 bytes (675 bytes decrease)
Output file size = 2510 bytes (675 bytes = 21.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/relabel-1.png
288x288 pixels, 8 bits/pixel, 228 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3354 bytes
Input file size = 4128 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2995
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2995
Output IDAT size = 2995 bytes (359 bytes decrease)
Output file size = 3073 bytes (1055 bytes = 25.56% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/custom-1.png
288x288 pixels, 8 bits/pixel, 232 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3399 bytes
Input file size = 4185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3045
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3045
Output IDAT size = 3045 bytes (354 bytes decrease)
Output file size = 3123 bytes (1062 bytes = 25.38% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/clm-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 4908 bytes
Input file size = 4986 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
Output IDAT size = 3659 bytes (1249 bytes decrease)
Output file size = 3737 bytes (1249 bytes = 25.05% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/by2sd-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5566 bytes
Input file size = 5644 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
Output IDAT size = 4018 bytes (1548 bytes decrease)
Output file size = 4096 bytes (1548 bytes = 27.43% decrease)
Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd)
Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics:
'from' must be a finite number
--- failed re-building ‘dotwhisker-vignette.Rmd’
--- re-building ‘kl2007_examples.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-2-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21601 bytes
Input file size = 22483 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20040
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19876
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19876
Output IDAT size = 19876 bytes (1725 bytes decrease)
Output file size = 19954 bytes (2529 bytes = 11.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-3-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48792 bytes
Input file size = 48930 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38149
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38149
Output IDAT size = 38149 bytes (10643 bytes decrease)
Output file size = 38227 bytes (10703 bytes = 21.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-4-1.png
672x768 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26211 bytes
Input file size = 27105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24057
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
Output IDAT size = 24030 bytes (2181 bytes decrease)
Output file size = 24108 bytes (2997 bytes = 11.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-5-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61554 bytes
Input file size = 61716 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
Output IDAT size = 47315 bytes (14239 bytes decrease)
Output file size = 47393 bytes (14323 bytes = 23.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-6-1.png
480x864 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26191 bytes
Input file size = 27085 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
Output IDAT size = 24023 bytes (2168 bytes decrease)
Output file size = 24101 bytes (2984 bytes = 11.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-7-1.png
384x864 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 65710 bytes
Input file size = 65884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
Output IDAT size = 47756 bytes (17954 bytes decrease)
Output file size = 47834 bytes (18050 bytes = 27.40% decrease)
--- finished re-building ‘kl2007_examples.Rmd’
SUMMARY: processing the following file failed:
‘dotwhisker-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.8.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/basic-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Input IDAT size = 2121 bytes
Input file size = 2976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854
Output IDAT size = 1854 bytes (267 bytes decrease)
Output file size = 2709 bytes (267 bytes = 8.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ci-1.png
288x288 pixels, 8 bits/pixel, 253 colors in palette
Input IDAT size = 2458 bytes
Input file size = 3307 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927
Output IDAT size = 1927 bytes (531 bytes decrease)
Output file size = 2776 bytes (531 bytes = 16.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/multipleModels-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11194 bytes
Input file size = 11284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025
Output IDAT size = 8025 bytes (3169 bytes decrease)
Output file size = 8103 bytes (3181 bytes = 28.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/intercept-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11006 bytes
Input file size = 11096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248
Output IDAT size = 8248 bytes (2758 bytes decrease)
Output file size = 8326 bytes (2770 bytes = 24.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ggplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9157 bytes
Input file size = 9247 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6818
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6818
Output IDAT size = 6818 bytes (2339 bytes decrease)
Output file size = 6896 bytes (2351 bytes = 25.42% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidyData-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Input IDAT size = 2126 bytes
Input file size = 2978 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866
Output IDAT size = 1866 bytes (260 bytes decrease)
Output file size = 2718 bytes (260 bytes = 8.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidy-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10170 bytes
Input file size = 10260 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144
Output IDAT size = 7144 bytes (3026 bytes decrease)
Output file size = 7222 bytes (3038 bytes = 29.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/regularExpression-1.png
288x288 pixels, 8 bits/pixel, 242 colors in palette
Input IDAT size = 2369 bytes
Input file size = 3185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694
Output IDAT size = 1694 bytes (675 bytes decrease)
Output file size = 2510 bytes (675 bytes = 21.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/relabel-1.png
288x288 pixels, 8 bits/pixel, 228 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3354 bytes
Input file size = 4128 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2995
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2995
Output IDAT size = 2995 bytes (359 bytes decrease)
Output file size = 3073 bytes (1055 bytes = 25.56% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/custom-1.png
288x288 pixels, 8 bits/pixel, 232 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3399 bytes
Input file size = 4185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3045
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3045
Output IDAT size = 3045 bytes (354 bytes decrease)
Output file size = 3123 bytes (1062 bytes = 25.38% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/clm-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 4908 bytes
Input file size = 4986 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659
Output IDAT size = 3659 bytes (1249 bytes decrease)
Output file size = 3737 bytes (1249 bytes = 25.05% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/by2sd-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5566 bytes
Input file size = 5644 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018
Output IDAT size = 4018 bytes (1548 bytes decrease)
Output file size = 4096 bytes (1548 bytes = 27.43% decrease)
Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd)
Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics:
'from' must be a finite number
--- failed re-building ‘dotwhisker-vignette.Rmd’
--- re-building ‘kl2007_examples.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-2-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21601 bytes
Input file size = 22483 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20040
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19876
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19876
Output IDAT size = 19876 bytes (1725 bytes decrease)
Output file size = 19954 bytes (2529 bytes = 11.25% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-3-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48792 bytes
Input file size = 48930 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38149
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38149
Output IDAT size = 38149 bytes (10643 bytes decrease)
Output file size = 38227 bytes (10703 bytes = 21.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-4-1.png
672x768 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26211 bytes
Input file size = 27105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24057
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030
Output IDAT size = 24030 bytes (2181 bytes decrease)
Output file size = 24108 bytes (2997 bytes = 11.06% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-5-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61554 bytes
Input file size = 61716 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315
Output IDAT size = 47315 bytes (14239 bytes decrease)
Output file size = 47393 bytes (14323 bytes = 23.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-6-1.png
480x864 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26191 bytes
Input file size = 27085 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023
Output IDAT size = 24023 bytes (2168 bytes decrease)
Output file size = 24101 bytes (2984 bytes = 11.02% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-7-1.png
384x864 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 65710 bytes
Input file size = 65884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756
Output IDAT size = 47756 bytes (17954 bytes decrease)
Output file size = 47834 bytes (18050 bytes = 27.40% decrease)
--- finished re-building ‘kl2007_examples.Rmd’
SUMMARY: processing the following file failed:
‘dotwhisker-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.8.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'dotwhisker-vignette.Rmd' using rmarkdown
Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd)
Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics:
'from' must be a finite number
--- failed re-building 'dotwhisker-vignette.Rmd'
--- re-building 'kl2007_examples.Rmd' using rmarkdown
--- finished re-building 'kl2007_examples.Rmd'
SUMMARY: processing the following file failed:
'dotwhisker-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64