Fstat {Geneland}R Documentation

F statistics

Description

Computes F statistics according to Weir and Cockerham's estimators.

Usage

Fstat(genotypes,allele.numbers, path.mcmc)

Arguments

genotypes Genotypes of individuals. A matrix with one line per individual and 2 columns per locus
allele.numbers A vector of integer containing the number of possible allele for each locus
path.mcmc Path to output files directory

Value

A list with components

Total.Fit A real number estimating the total Fit
Pairwise.Fis A matrix of real numbers estimating the pairwise Fis
Pairwise.Fst A matrix of real numbers estimating the pairwise Fst
Pairwise.Fit A matrix of real numbers estimating the pairwise Fit

Author(s)

Arnaud Estoup for original code in Turbo Pascal.

Translation in Fortran and interface with R by Gilles Guillot

References

Weir, B.S. and C.C. Cockerham, Estimating F-statistics for the analysis of population structure, Evolution, 1984, vol. 38, 1358-1370.


[Package Geneland version 0.5 Index]