gb2fasta {seqinr}R Documentation

conversion of GenBank file into fasta file

Description

Converts a single entry in GenBank format into a fasta file.

Usage

gb2fasta(source.file =
"ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Agrobacterium_tumefaciens_C58_Cereon/NC_003065.gbk",
destination.file = "Agrobacterium_tumefaciens_C58_Cereon.fasta")

Arguments

source.file GenBank file
destination.file Fasta file

Details

Multiple entries in GenBank file are not supported.

Value

none

Author(s)

J.R. Lobry

References

  To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

See Also

oriloc

Examples

## Not run: gb2fasta()

[Package seqinr version 1.0-2 Index]