Relevance or Dependency network and signaling pathway discovery

Documentation for package `GeneNT' version 1.3

BEST.kendall	BLAST type search for similar co-expressions with controlled FDR and MAS using Kendall correlation statistic
BEST.pearson	BLAST type search for similar co-expressions with controlled FDR and MAS using Pearson correlation statistic
cor.confint	Asymptotic confidence intervals of Pearson correlation coefficient
cor.rep	Estimating gene expression correlation from replicated microarray data
cor.rep.bootci	Bootstrap Confidence Interval for multivariate correlation estimator from replicated gene microarray data
cor.rep.pv	Multivariate correlation estimator from replicated gene microarray data
corfdrci	Two-stage screening procedure for screening gene pairs based on Pearson correlation statistic
corfdrci.inv	Inverse screening procedure based on Pearson correlation coefficient
dat	Part of galactose metabolism data. Ideker et al. Science, 292:929-934
getBM	Generate Pajek compatible matrix from screened gene pairs
kendall.confint	Asymptotic confidence intervals of Pearson correlation coefficient
kendallfdrci	Two-stage screening procedure based on Kendall correlation coefficient
ncclust	Network constrained clustering
pcor.confint	Asymptotic confidence intervals of partial correlation coefficient
pcorfdrci	Two-stage screening procedure based on partial correlation coefficient in Graphic Gaussian Model framework
pcorfdrci.inv	Inverse screening procedure based on Kendall correlation coefficient
sm.name	Extract gene names from data matrix
tdclust	Traditional clustering