* Installing *source* package 'Matrix' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c Metis_utils.c -o Metis_utils.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c R_ldl.c -o R_ldl.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dgBCMatrix.c -o dgBCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c init.c -o init.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c lmer.c -o lmer.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c Mutils.c -o Mutils.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dense.c -o dense.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dCholCMatrix.c -o dCholCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dppMatrix.c -o dppMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dsTMatrix.c -o dsTMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dspMatrix.c -o dspMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c factorizations.c -o factorizations.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c lCholCMatrix.c -o lCholCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c lgTMatrix.c -o lgTMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c lsCMatrix.c -o lsCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c ltCMatrix.c -o ltCMatrix.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I./Metis -fno-common -g -O2 -c triplet_to_col.c -o triplet_to_col.o touch Metis.stamp gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c coarsen.c -o coarsen.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c fm.c -o fm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c initpart.c -o initpart.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c match.c -o match.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c ccgraph.c -o ccgraph.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c memory.c -o memory.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c pmetis.c -o pmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c pqueue.c -o pqueue.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c refine.c -o refine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c util.c -o util.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c timing.c -o timing.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c debug.c -o debug.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c bucketsort.c -o bucketsort.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c graph.c -o graph.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c stat.c -o stat.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kmetis.c -o kmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kwayrefine.c -o kwayrefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kwayfm.c -o kwayfm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c balance.c -o balance.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c ometis.c -o ometis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c srefine.c -o srefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c sfm.c -o sfm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c separator.c -o separator.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mincover.c -o mincover.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mmd.c -o mmd.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mesh.c -o mesh.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c meshpart.c -o meshpart.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c frename.c -o frename.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c fortran.c -o fortran.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c myqsort.c -o myqsort.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c compress.c -o compress.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c parmetis.c -o parmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c estmem.c -o estmem.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mpmetis.c -o mpmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mcoarsen.c -o mcoarsen.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mmatch.c -o mmatch.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c minitpart.c -o minitpart.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mbalance.c -o mbalance.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mrefine.c -o mrefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mutil.c -o mutil.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mfm.c -o mfm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mkmetis.c -o mkmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mkwayrefine.c -o mkwayrefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mkwayfmh.c -o mkwayfmh.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mrefine2.c -o mrefine2.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c minitpart2.c -o minitpart2.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mbalance2.c -o mbalance2.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c mfm2.c -o mfm2.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kvmetis.c -o kvmetis.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kwayvolrefine.c -o kwayvolrefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c kwayvolfm.c -o kwayvolfm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -I. -fno-common -g -O2 -c subdomains.c -o subdomains.o ar -rucs ../Metis.a coarsen.o fm.o initpart.o match.o ccgraph.o memory.o pmetis.o pqueue.o refine.o util.o timing.o debug.o bucketsort.o graph.o stat.o kmetis.o kwayrefine.o kwayfm.o balance.o ometis.o srefine.o sfm.o separator.o mincover.o mmd.o mesh.o meshpart.o frename.o fortran.o myqsort.o compress.o parmetis.o estmem.o mpmetis.o mcoarsen.o mmatch.o minitpart.o mbalance.o mrefine.o mutil.o mfm.o mkmetis.o mkwayrefine.o mkwayfmh.o mrefine2.o minitpart2.o mbalance2.o mfm2.o kvmetis.o kwayvolrefine.o kwayvolfm.o subdomains.o gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o Matrix.so Metis_utils.o R_ldl.o dgBCMatrix.o init.o lmer.o Mutils.o dense.o dCholCMatrix.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsTMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o lCholCMatrix.o lgCMatrix.o lgTMatrix.o lsCMatrix.o ltCMatrix.o triplet_to_col.o Metis.a -framework vecLib -lcc_dynamic -framework R ld: warning multiple definitions of symbol _xerbla_ /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib(single module) definition of _xerbla_ /Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_ ** R ** data ** moving datasets to lazyload DB ** inst ** preparing package for lazy loading Creating a new generic function for 'as.matrix' in 'Matrix' Creating a new generic function for 'unname' in 'Matrix' Creating a new generic function for 'crossprod' in 'Matrix' Creating a new generic function for 'solve' in 'Matrix' Creating a new generic function for 't' in 'Matrix' Creating a new generic function for 'diag' in 'Matrix' Creating a new generic function for 'determinant' in 'Matrix' Creating a new generic function for 'image' in 'Matrix' Creating a new generic function for 'kronecker' in 'Matrix' Creating a new generic function for 'colSums' in 'Matrix' Creating a new generic function for 'colMeans' in 'Matrix' Creating a new generic function for 'rowSums' in 'Matrix' Creating a new generic function for 'rowMeans' in 'Matrix' Creating a new generic function for 'chol' in 'Matrix' Creating a new generic function for 'summary' in 'Matrix' Creating a new generic function for 'logLik' in 'Matrix' Creating a new generic function for 'anova' in 'Matrix' Creating a new generic function for 'update' in 'Matrix' Creating a new generic function for 'confint' in 'Matrix' Creating a new generic function for 'deviance' in 'Matrix' Creating a new generic function for 'formula' in 'Matrix' Creating a new generic function for 'vcov' in 'Matrix' Creating a new generic function for 'fitted' in 'Matrix' Creating a new generic function for 'residuals' in 'Matrix' Creating a new generic function for 'resid' in 'Matrix' Creating a new generic function for 'coef' in 'Matrix' Creating a new generic function for 'plot' in 'Matrix' Creating a new generic function for 'with' in 'Matrix' Creating a new generic function for 'terms' in 'Matrix' ** help >>> Building/Updating help pages for package 'Matrix' Formats: text html latex example BIC text html latex Cholesky-class text html latex example Hilbert text html latex example LU-class text html latex example Matrix-class text html latex Matrix text html latex example Schur text html latex example VarCorr-class text html latex VarCorr text html latex example Xtrct-methods text html latex example bCrosstab text html latex example corrmatrix-class text html latex example dCholCMatrix-class text html latex example dMatrix-class text html latex ddenseMatrix-class text html latex example dgBCMatrix-class text html latex dgCMatrix-class text html latex example dgRMatrix-class text html latex dgTMatrix-class text html latex example dgeMatrix-class text html latex dpoMatrix-class text html latex example dsCMatrix-class text html latex dsparseMatrix-class text html latex example dsyMatrix-class text html latex example dtCMatrix-class text html latex dtpMatrix-class text html latex dtrMatrix-class text html latex expand text html latex example expm text html latex example facmul text html latex example fixef text html latex example lmer-class text html latex lmer text html latex example lsparseMatrix-classes text html latex lu text html latex example mm text html latex example norm text html latex example pMatrix-class text html latex example pdmatrix-class text html latex ranef text html latex example rcond text html latex example sparseMatrix-class text html latex example tcrossprod text html latex example unpack text html latex example y text html latex example ** building package indices ... * DONE (Matrix)