* Installing *source* package 'ape' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c bipartition.c -o bipartition.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c dist_dna.c -o dist_dna.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c nprsfunc.c -o nprsfunc.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c plot_phylo.c -o plot_phylo.o plot_phylo.c: In function `node_depth_edgelength': plot_phylo.c:30: warning: assignment makes integer from pointer without a cast gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c treefunc.c -o treefunc.o gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o ape.so bipartition.o dist_dna.o nprsfunc.o plot_phylo.o treefunc.o -lcc_dynamic -framework R ld: warning multiple definitions of symbol _xerbla_ /Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_ /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib(single module) definition of _xerbla_ ** R ** data ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'ape' Formats: text html latex example Correlogram text html latex example GC.content text html latex Initialize.corPhyl text html latex MoranI text html latex example NPRS.criterion text html latex example add.scale.bar text html latex example all.equal.phylo text html latex example ape-internal text html latex as.matching text html latex example as.phylo text html latex example axisPhylo text html latex example balance text html latex base.freq text html latex bd.ext text html latex example bind.tree text html latex example bird.families text html latex example bird.orders text html latex example birthdeath text html latex boot.phylo text html latex branching.times text html latex carnivora text html latex example cherry text html latex chiroptera text html latex example chronogram text html latex example coalescent.intervals text html latex example collapsed.intervals text html latex example compar.cheverud text html latex example compar.gee text html latex example compar.lynch text html latex example compute.brlen text html latex example corBrownian text html latex corClasses text html latex example corGrafen text html latex corMartins text html latex discrete.dist text html latex dist.dna text html latex dist.gene text html latex dist.phylo text html latex dist.taxo text html latex dist.topo text html latex example diversi.gof text html latex diversi.time text html latex drop.tip text html latex example gammaStat text html latex heterozygosity text html latex hivtree text html latex example howmanytrees text html latex example is.binary.tree text html latex example is.ultrametric text html latex klastorin text html latex example landplants text html latex example ltt.plot text html latex example mantel.test text html latex example mcmc.popsize text html latex example mst text html latex example multi2di text html latex example nj text html latex example node.depth text html latex node.leafnumber text html latex node.sons text html latex nodelabels text html latex example nuc.div text html latex example opsin text html latex example panel.superpose.correlogram text html latex phymltest text html latex example pic text html latex example plot.correlogram text html latex plot.correlogramList text html latex plot.phylo text html latex example plot.varcomp text html latex ratogram text html latex example read.GenBank text html latex example read.dna text html latex example read.nexus text html latex read.tree text html latex example root text html latex example rotate text html latex example rtree text html latex example seg.sites text html latex example skyline text html latex example skylineplot text html latex example summary.phylo text html latex example theta.h text html latex theta.k text html latex theta.s text html latex example varcomp text html latex example vcv.phylo text html latex which.edge text html latex woodmouse text html latex example write.dna text html latex write.nexus text html latex write.tree text html latex xenarthra text html latex example yule text html latex yule.cov text html latex example zoom text html latex example ** building package indices ... * DONE (ape)