* Installing *source* package 'qtl' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c discan.c -o discan.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c discan_covar.c -o discan_covar.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c fitqtl_imp.c -o fitqtl_imp.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_4way.c -o hmm_4way.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_bc.c -o hmm_bc.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_cc.c -o hmm_cc.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_f2.c -o hmm_f2.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_f2ss.c -o hmm_f2ss.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c hmm_main.c -o hmm_main.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c info.c -o info.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c ripple.c -o ripple.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_em.c -o scanone_em.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_em_covar.c -o scanone_em_covar.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_hk.c -o scanone_hk.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_imp.c -o scanone_imp.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_mr.c -o scanone_mr.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scanone_np.c -o scanone_np.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scantwo_binary_em.c -o scantwo_binary_em.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scantwo_em.c -o scantwo_em.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scantwo_hk.c -o scantwo_hk.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scantwo_imp.c -o scantwo_imp.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c scantwo_mr.c -o scantwo_mr.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c simulate.c -o simulate.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c util.c -o util.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c vbscan.c -o vbscan.o gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o qtl.so discan.o discan_covar.o fitqtl_imp.o hmm_4way.o hmm_bc.o hmm_cc.o hmm_f2.o hmm_f2ss.o hmm_main.o info.o ripple.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o simulate.o util.o vbscan.o -lcc_dynamic -framework R ld: warning multiple definitions of symbol _xerbla_ /Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_ /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib(single module) definition of _xerbla_ ** R ** data ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'qtl' Formats: text html latex example a.starting.point text html latex argmax.geno text html latex example arithscan text html latex example badorder text html latex example bayesint text html latex example bristle3 text html latex example bristleX text html latex example c.cross text html latex example calc.errorlod text html latex example calc.genoprob text html latex example clean text html latex example compareGeno text html latex example comparecrosses text html latex example convert.scanone text html latex convert2ss text html latex example drop.markers text html latex example drop.nullmarkers text html latex example effectplot text html latex example effectscan text html latex example est.map text html latex example est.rf text html latex example fake.4way text html latex example fake.bc text html latex example fake.f2 text html latex example fill.geno text html latex example find.flanking text html latex example find.marker text html latex example find.pheno text html latex example fitqtl text html latex example geno.table text html latex example hyper text html latex example listeria text html latex example lodint text html latex example makeqtl text html latex example map10 text html latex example max.scanone text html latex example max.scantwo text html latex example movemarker text html latex example nmissing text html latex example plot.cross text html latex example plot.errorlod text html latex example plot.geno text html latex example plot.info text html latex example plot.map text html latex example plot.missing text html latex example plot.pxg text html latex example plot.rf text html latex example plot.scanone text html latex example plot.scantwo text html latex example print.cross text html latex example pull.geno text html latex example pull.map text html latex example qtl-internal text html latex read.cross text html latex example replace.map text html latex example ripple text html latex example scanone text html latex example scanqtl text html latex example scantwo text html latex example sim.cross text html latex example sim.geno text html latex example sim.map text html latex example strip.partials text html latex example subset.cross text html latex example summary.cross text html latex example summary.fitqtl text html latex example summary.map text html latex example summary.ripple text html latex example summary.scanone text html latex example summary.scantwo text html latex example switch.order text html latex example top.errorlod text html latex example write.cross text html latex example ** building package indices ... * DONE (qtl)