Digital PCR Analysis


[Up] [Top]

Documentation for package ‘dpcR’ version 0.1.4.0

Help Pages

dpcR-package Digital PCR Analysis
adpcr Class '"adpcr"' - end-point array digital PCR experiments
adpcr-class Class '"adpcr"' - end-point array digital PCR experiments
adpcr2ppp Convert adpcr to ppp
binarize Binarize digital PCR data
bind_dpcr Bind dpcr objects
bind_dpcr,adpcr Bind dpcr objects
bind_dpcr,ddpcr Bind dpcr objects
bind_dpcr,list Bind dpcr objects
bind_dpcr-method Bind dpcr objects
bind_dpcr-methods Bind dpcr objects
bioamp A function to analyze plot the raw data from a BioRad droplet digital PCR experiment
coef-method Class '"count_test"'
compare_dens Plot and Compare Densities
count_test Class '"count_test"'
count_test-class Class '"count_test"'
create_dpcr Create dpcR object
ddpcr Class '"ddpcr"'
ddpcr-class Class '"ddpcr"'
dpcR Digital PCR Analysis
dpcr_density Calculate Density of Digital PCR
dpcr_density_gui Digital PCR Density Graphical User Interface
extract_dpcr Extract Digital PCR Experiment
limit_cq Limit Cy0 values
many_peaks Artificial data set with many peaks
moments Calculate Moments of Poisson Distribution
moments-method Calculate Moments of Poisson Distribution
moments-methods Calculate Moments of Poisson Distribution
num2int Convert numeric to integer
pds Plasmid dilution series results
pds_raw Plasmid dilution series raw data
plot-method Class '"count_test"'
plot-method Plot 'qpcrpp' objects
plot.count_test Class '"count_test"'
plot.qpcrpp Plot 'qpcrpp' objects
plot_panel Plot Panel
plot_vic_fam Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
qpcr2pp qPCR to Poisson Process
qpcrpp Class '"qpcrpp"'
qpcrpp-class Class '"qpcrpp"'
qpcr_analyser qPCR Analyser
qpcr_analyser-method qPCR Analyser
qpcr_analyser-methods qPCR Analyser
rtadpcr Class '"rtadpcr"' - real-time array digital PCR experiments
rtadpcr-class Class '"rtadpcr"' - real-time array digital PCR experiments
show Methods for Function 'show'
show-method Class '"count_test"'
show-method Class '"qpcrpp"'
show-method Methods for Function 'show'
show-methods Methods for Function 'show'
show.qpcrpp Class '"qpcrpp"'
sim_adpcr Simulate Array Digital PCR
sim_ddpcr Simulate Droplet Digital PCR
summary Methods for Function 'summary'
summary-method Class '"count_test"'
summary-method Class '"qpcrpp"'
summary-method Methods for Function 'summary'
summary-methods Methods for Function 'summary'
summary.adpcr Methods for Function 'summary'
summary.ddpcr Methods for Function 'summary'
summary.qpcrpp Class '"qpcrpp"'
test_counts Test counts
test_counts_gui Compare digital PCR runs - interactive presentation
test_panel Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
test_peaks Peak Test
test_peaks-method Peak Test
test_peaks-methods Peak Test
test_ratio Rate ratio test
test_ratio,adpcr Rate ratio test
test_ratio,ddpcr Rate ratio test
test_ratio,numeric Rate ratio test
test_ratio-method Rate ratio test