Functions to calculate relatedness on diploid genetic data

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Documentation for package ‘Demerelate’ version 0.8-1

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Demerelate-package Demerelate - Algorithms to estimate pairwise relatedness within populations based on allele sharing
allele.sharing Calculates allele sharing rates or similarity estimators for two populations
Demerelate Demerelate - Algorithms to estimate pairwise relatedness within populations based on allele sharing
demereldist Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
demerelpop Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
demerelref Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
emp.calc Function to calculate pairwise relatedness within populations based on allele sharing.
F.stat Head function to calculate F statistics.
Fis Calculates allele and genotype frequencies
Fis.calc Calculation of Fis empirical and bootstrapped values
geo.dist Calculates geographic distances.
glm.prep Preparation for multinomial logistic regression.
input.txt Reads different types of tables and returns an object.
inputformat Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
Lin.reg.distance Linear regression of empirical genetic relatedness with geographic distance.
Loci.test Analysis on differences in mean relatedness based on number of loci used for calculations
offspring Mendelian offpsring generator
queller Queller and Goodnight estimator of relatedness
random.pairs Random pairs generator
relate.calc Coordinates internally reference and empirical datasets and statistics
stat.pops Calculation of Fis empirical and bootstrapped values
weir Calculation of F_{is} based on Weir and Cockerham 1984