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| NAM-package | Nested Association Mapping Analysis |
| .Random.seed | Internal functions |
| calcSize | Internal functions |
| chr | Tetra-seed Pods |
| cleanREP | SNP Quality Control |
| covar | Bayesian Gibbs Sampler |
| fam | Tetra-seed Pods |
| Fst | Fixation Index |
| funI | Internal functions |
| funX | Internal functions |
| gen | Tetra-seed Pods |
| gibbs | Bayesian Gibbs Sampler |
| gwas | Empirical Bayes Genome Wide Association Mapping |
| gwas2 | Empirical Bayes Genome Wide Association Mapping |
| inputRow | Internal functions |
| MCreml | Restricted Maximum Likelihood |
| NAM | Nested Association Mapping Analysis |
| phys | Tetra-seed Pods |
| plot.fst | Fixation Index |
| plot.gibbs | Bayesian Gibbs Sampler |
| plot.H2 | SNP heritability |
| plot.NAM | Empirical Bayes Genome Wide Association Mapping |
| RcppExports | Internal functions |
| reference | Changing the Reference Genotype |
| reml | Restricted Maximum Likelihood |
| SAMP | Internal functions |
| snpH2 | SNP heritability |
| snpQC | SNP Quality Control |
| timesMatrix | Internal functions |
| timesVec | Internal functions |
| tpod | Tetra-seed Pods |
| y | Tetra-seed Pods |