Genotyping using Next Generation Sequencing Data

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Documentation for package ‘ebGenotyping’ version 1.0

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ebGenotyping-package Genotyping using Next Generation Sequencing Data
delta.recal One step maximization of delta when given other parameters
ebGenotyping Genotyping using Next Generation Sequencing Data
ECM Genotyping using Next Generation sequencing Data
ecm An initial model of genotyping using Next Generation sequencing Data
f.delta.1 The first-order derivative with respect to delta
f.delta.2 The second-order derivative with respect to delta
f.eta A part of Q function which is related to eta
f.eta.1 The first-order derivative with respect to eta
f.eta.2 The second-order derivative with respect to eta
f.mu.1 The first-order derivative with respect to mu
f.mu.2 The second-order derivative with respect to mu
logit Logit Transformation
loglike The observed data log-likelihood
mu.recal One step maximization of mu when given other parameters
rlogit Inverse Logit Transformation
z.adj.1 Adjustment based on data