Spatial Ecology Miscellaneous Methods


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Documentation for package ‘ecospat’ version 1.1

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ecospat-package Spatial Ecology Miscellaneous Methods
ecospat Spatial Ecology Miscellaneous Methods
ecospat.binary.model Generate Binary Models
ecospat.boyce Calculate Boyce Index
ecospat.calculate.pd Calculate Phylogenetic Diversity Measures
ecospat.caleval Calibration And Evaluation Dataset
ecospat.cons_Cscore Constrained co-occurrence analysis.
ecospat.co_occurrences Species Co-occurrences
ecospat.cv.example Cross Validation Example Function
ecospat.cv.gam GAM Cross Validation
ecospat.cv.gbm GBM Cross Validation
ecospat.cv.glm GLM Cross Validation
ecospat.cv.me Maxent Cross Validation
ecospat.cv.rf RandomForest Cross Validation
ecospat.env Package Environment
ecospat.Epred Prediction Mean
ecospat.fun.arrows Draw Centroid Arrows
ecospat.grid.clim.dyn Dynamic Occurrence Densities Grid
ecospat.makeDataFrame Make Data Frame
ecospat.mantel.correlogram Mantel Correlogram
ecospat.maxentvarimport Maxent Variable Importance
ecospat.mess MESS
ecospat.migclim Implementing dispersal into species distribution models
ecospat.niche.dyn.index Niche Expansion, Stability, and Unfilling
ecospat.niche.equivalency.test Niche Equivalency Test
ecospat.niche.overlap Calculate Niche Overlap
ecospat.niche.similarity.test Niche Similarity Test
ecospat.npred Number Of Predictors
ecospat.occ.desaggregation Species Occurrences Desaggregation
ecospat.permut.glm GLM Permutation Function
ecospat.plot.contrib Plot Variables Contribution
ecospat.plot.mess Plot MESS
ecospat.plot.niche Plot Niche
ecospat.plot.niche.dyn Niche Categories and Species Density
ecospat.plot.overlap.test Plot Overlap Test
ecospat.rand.pseudoabsences Sample Pseudo-Absences
ecospat.sample.envar Sample Environmental Variables
ecospat.SSDMeval SSDM evaluation
ecospat.testData Test data for the ecospat library
ecospat.testNiche Test data for the niche overlap analysis
ecospat.testTree Test tree for the ecospat library
ecospat.varpart Variation Partitioning for GLM or GAM