kobe-package |
Tools for provide scientific fisheries advice |
assmt |
Example Datasets |
dRate |
dRate |
hinge |
incr |
iav |
iav |
incr |
incr |
kobe |
~~ Methods for Function 'kobe' in Package 'kobe' ~~ |
kobe-method |
~~ Methods for Function 'kobe' in Package 'kobe' ~~ |
kobe2box |
Reads pro2box projection results and returns stock and harvest rate relative to MSY reference points or proxies. |
kobeAspic |
Reads ASPIC bootstraps and projections and returns stock and harvest rate relative to MSY reference points |
kobeDens |
kobeDens |
kobeFreq |
kobeFreq |
kobeInterp |
Methods to generate the Kobe II Strategy Matrix. |
kobeInterp-method |
Methods to generate the Kobe II Strategy Matrix. |
kobeInterp-methods |
Methods to generate the Kobe II Strategy Matrix. |
kobeMFCL |
Reads Multifan-CL assessment results and returns stock and harvest rate relative to MSY reference points |
kobeP |
Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants. |
kobeP-methods |
Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants. |
kobePhase |
kobePhase |
kobePhase-method |
kobePhase |
kobePhaseMar |
Kobe Phase Plot with Marginal Densities |
kobeProb |
kobeProb |
kobeShade |
Shades matrix depending on value of elements |
kobeShade-method |
Shades matrix depending on value of elements |
kobeShade-methods |
Shades matrix depending on value of elements |
kobeSmry |
Creates Summaries i.e. probability of being in the green quadrant |
kobeSmry-method |
Creates Summaries i.e. probability of being in the green quadrant |
kobeSS |
Reads SS assessment results and returns stock and harvest rate relative to MSY reference points |
kobeSS3 |
Reads SS3 results and returns stock and harvest rate relative to MSY reference points |
kobeTrks |
Creates tracks for plotting on phase plot |
kobeTrks-method |
Creates tracks for plotting on phase plot |
multiplot |
Calculates confidence intervals for different probabiity levels for pairs of data points. |
prj |
Example Datasets |
prj1 |
Example Datasets |
recovered |
recovered |
sims |
Example Datasets |
theme_ms |
ggplot2 theme |