netweavers-package | NetWeAvers: Weighted Averages for Networks |
clust_2_proteinVH | Van Hoof Dataset |
customSummarizer | Aggregate Quantified Peptides Values From a Data Frame |
dataVH | Van Hoof Dataset |
DEtest | Differential Expression Testing using Linear Models and Contrasts |
DEtestVH | Van Hoof Dataset |
esetSummarizer | Aggregate Quantified Peptides Values From an 'ExpressionSet' |
ExpSetVH | Van Hoof Dataset |
fillup | Combine Vectors of Varying Length into a Data Frame |
filterNetwork | Filter a Network Based on Identifier |
filtNetVH | Van Hoof Dataset |
findDenseClusters | Find Dense Clusters in a Network |
fisherMethod | Fisher's Method for Multiple Peptides |
generateContrastMatrix | Differential Expression Testing using Linear Models and Contrasts |
measureCalc | Calculate Protein Measures for NetWeAvers Algorithm |
netweavers | NetWeAvers: Weighted Averages for Networks |
networkVH | Van Hoof Dataset |
permScores | Calculate Cluster Permutation _p_-Values and Scores |
permTest | Calculate Cluster Permutation _p_-Values and Scores |
phenoDataVH | Van Hoof Dataset |
proteinInfoVH | Van Hoof Dataset |
pvalsSumVH | Van Hoof Dataset |
pvalueSummarizer | Fisher's Method for Multiple Peptides |
runNetweavers | Perform the NetWeAvers Algorithm |
scoreClusters | Calculate Total Cluster Score for All Clusters |
summarizedExpSetVH | Van Hoof Dataset |
summarizer | Aggregate Quantified Peptides Values |
vanHoof | Van Hoof Dataset |
weightCalc | Calculate Weights for NetWeAvers Algorithm |