NetWeAvers: Weighted Averages for Networks


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Documentation for package ‘netweavers’ version 1.1

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netweavers-package NetWeAvers: Weighted Averages for Networks
clust_2_proteinVH Van Hoof Dataset
customSummarizer Aggregate Quantified Peptides Values From a Data Frame
dataVH Van Hoof Dataset
DEtest Differential Expression Testing using Linear Models and Contrasts
DEtestVH Van Hoof Dataset
esetSummarizer Aggregate Quantified Peptides Values From an 'ExpressionSet'
ExpSetVH Van Hoof Dataset
fillup Combine Vectors of Varying Length into a Data Frame
filterNetwork Filter a Network Based on Identifier
filtNetVH Van Hoof Dataset
findDenseClusters Find Dense Clusters in a Network
fisherMethod Fisher's Method for Multiple Peptides
generateContrastMatrix Differential Expression Testing using Linear Models and Contrasts
measureCalc Calculate Protein Measures for NetWeAvers Algorithm
netweavers NetWeAvers: Weighted Averages for Networks
networkVH Van Hoof Dataset
permScores Calculate Cluster Permutation _p_-Values and Scores
permTest Calculate Cluster Permutation _p_-Values and Scores
phenoDataVH Van Hoof Dataset
proteinInfoVH Van Hoof Dataset
pvalsSumVH Van Hoof Dataset
pvalueSummarizer Fisher's Method for Multiple Peptides
runNetweavers Perform the NetWeAvers Algorithm
scoreClusters Calculate Total Cluster Score for All Clusters
summarizedExpSetVH Van Hoof Dataset
summarizer Aggregate Quantified Peptides Values
vanHoof Van Hoof Dataset
weightCalc Calculate Weights for NetWeAvers Algorithm