Relative Simulator

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Documentation for package ‘relSim’ version 0.2-0

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blockSim Perform relatives simulations using large memory blocks in C
breedFst Breed a population with an approximate level of theta(Fst)
calcFst Caculate locus-wise and population Fst values
checkFreqs Make sure that the frequencies are such
ep Calculate the exclusion power of a multiplex by locus
errorRate Returns the false positive or false negative rates for a set of IBS and/or KI thresholds
exclusionPower Calculate the exclusion power of a multiplex by locus
fbiCaucs CODIS STR Loci allele frequency data
fetchBMdata Retrieve data from Budowle and Moretti (1999) from the web
IBS Identity by state
locusIBS Identity by state at a locus
lrMix Calculate locuswise likelihood ratios for two person victim/suspect mixtures
lrPC Likelihood Ratio for Parent-Child / Paternity Index
lrSib Likelihood Ratio / Kinship Index for full-siblings
lrSibDebug Likelihood Ratio / Kinship Index for full-siblings
normalizeFreqs Normalize frequencies to 1
print.population Print summary details of a substructed population
print.profile Print a DNA profile
randomChild Generate a random child from a given DNA profile and a given set of allele frequencies
randomPCPairs Generate one or more random parent/child pairs from a given set of allele frequencies
randomProfile Generate a random DNA profile from a given set of allele frequencies
randomProfilePairs Generate one or more random DNA profile pairs from a given set of allele frequencies
randomSample Generate a random sample of related (or unrelated) pairs of people
randomSib Generate a random sibling from a given DNA profile and a given set of allele frequencies
randomSibPairs Generate one or more pairs of random siblings from a given set of allele frequencies
readFreqs Read in a file of allele frequencies
readResults Read a simulation result set from file
sim Perform the relatives simulation
toNexus Export a population with substructure to a Nexus file
USCaucs CODIS STR Loci allele frequency data