3D Brain Visualization

[Up] [Top]

Documentation for package ‘threeBrain’ version 0.1.4

Help Pages

AbstractGeom R6 Class - Abstract Class of Geometries
BlankGeom A geometry that renders nothing
brain_setup Setup Package, Install Environment
check_freesurfer_path Function to check whether 'FreeSurfer' folder has everything we need
create_group Create a geometry group containing multiple geometries
DataCubeGeom R6 Class - Generate Data Cube Geometry
DataCubeGeom2 R6 Class - Generate Data Cube Geometry via 3D Volume Texture
download_N27 Download and Manage Template Subjects
download_template_subject Download and Manage Template Subjects
FreeGeom R6 Class - Generate Geometry from Vertices and Face Indices
freesurfer_brain Read 'FreeSurfer' surface and volume files
GeomGroup R6 Class - Generate Group of Geometries
geom_freemesh Creates any mesh geometry given vertices and face indices
geom_sphere Create sphere geometry
merge_brain Create Multi-subject Template
N27 Download and Manage Template Subjects
ravepy Manage Python Environment from RAVE
ravepy_check Manage Python Environment from RAVE
ravepy_conda_install Manage Python Environment from RAVE
ravepy_info Manage Python Environment from RAVE
ravepy_register Manage Python Environment from RAVE
ravepy_remove Manage Python Environment from RAVE
ravepy_virtualenv_install Manage Python Environment from RAVE
read_fs_asc Read 'FreeSurfer' ascii file
read_fs_m3z Read 'FreeSurfer' m3z file
read_fs_mgh_mgz Read 'FreeSurfer' 'mgz/mgh' file
read_gii2 Function to load surface data from 'Gifti' files
read_mgz Function to load 'FreeSurfer' 'mgz/mgh' file
renderBrain Shiny Renderer for threeBrain Widgets
reorient_volume Function to reshape data to 'RAS' order
save_brain Save threeBrain widgets to local file system
set_default_template Download and Manage Template Subjects
SphereGeom R6 Class - Generate Sphere Geometry
template_subject Download and Manage Template Subjects
threejsBrainOutput Shiny Output for threeBrain Widgets
threejs_brain Create a Threejs Brain and View it in Browsers
three_scatter 3D Scatter Plot